Cucurbita maxima (winter squash): 111471845
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Entry
111471845 CDS
T05246
Name
(RefSeq) 5'-3' exoribonuclease 3
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03008
Ribosome biogenesis in eukaryotes
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111471845
09123 Folding, sorting and degradation
03018 RNA degradation
111471845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmax03021
]
111471845
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111471845
03009 Ribosome biogenesis [BR:
cmax03009
]
111471845
03016 Transfer RNA biogenesis [BR:
cmax03016
]
111471845
Transcription machinery [BR:
cmax03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111471845
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
111471845
Ribosome biogenesis [BR:
cmax03009
]
Eukaryotic type
Pre-60S particles
RNases
111471845
Transfer RNA biogenesis [BR:
cmax03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
111471845
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
111471845
NCBI-ProteinID:
XP_022973274
UniProt:
A0A6J1IE37
LinkDB
All DBs
Position
Unknown
AA seq
1103 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVVDVIEEESVVIDGISIPVDTSKPNPNNLEFDNLYLDMNGIIH
PCFHPEDRPSPTTFSEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDATDAAAEEARLREEFEREGRKLPPKQESQVFDSNVITPGTDFMAVLSIALQYYIHL
RLNNDPGWKNVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQQEKCFLCGQMGHFAADCEGKAKRKAGEFDEKGENVVKKPY
QFLHIWILREYLEHEMRIPNVPFEINLERIVDDFVFMCFFVGNDFLPHMPTLEIREGAIN
LLLAVYKKEFRALGGYLTDGSKPNLRRVEHFIQAVGSYEDRIFQKRARLHQKQADRIKRE
KGQTRRGDDAEPQVQPSLVPVARFRESRLASGPCPSPYEQSGFGKATSKLPGLKNKNKQS
LESDDSGPYVHRNKVARPSSGASIGSAIVEAENTLEIDIHENKNELKAKLKEILREKSDV
FNTDNAEEDKIKLGVPGWRERYYNEKFSANTPEELDDTRKDVVLRYTEGLCWVMHYYYEG
VCSWQWFYPYHYAPFASDLIGLGELDISFNLGTPFKPFNQLLGVFPAASAHALPEKYRKL
MTDQNSPIIDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLSEVDKIEHTLTEEEARRN
SVMFDMLFVTSSHPLSVSIYSLDNRCKQLRERERIEVKEKMNPEHSGGMNGYLSPCSGEL
CPPIFRSPVEGLEDIIDNQVICAIYRLPDAHKHITQPPAGVNFPPKIVSMGDMKPEPVLW
HEDSGRRHHHDNGRYNDSTRPNPPGAITGRHLGDAAHRLVANSLQVRGGDRKGHYNWQQA
PSLSHTVQPYIPGHPPHPHMDYRSRDQEADYRMPPGGRPNYSQGHNRPMNPNAMPSHLDD
AYHQPRPVYHHDPRPHSQHYNSRSHNQMNSQHYGENPEAYYPSTSTSWSRHGDVPPYPPN
GPTSHHPPTYQSGYSYNQLAADSGISSQQHQGRAGRPPPAGNNGGGGPQQQYGNNRYYAF
DRRGNGRPPSSASHSHGRRQKPY
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggccttctataggtggttagcggagaagtatcctttggtggtcgttgat
gtaattgaggaagaatcagttgtaatagatggcatttccattccagttgatacaagcaaa
cccaatccaaataatcttgaatttgataacctctacctcgacatgaatggcataattcat
ccttgcttccatcctgaagataggccttctccaacaacttttagcgaggtatttcaatgc
atgtttgattacattgataggctttttgtcatggttcggcctagaaaattgctatatatg
gctattgatggtgttgcccccagggcaaaaatgaatcaacaacgatctcggcgatttaga
gctgcaaaagatgccacagatgcagcagctgaagaggcacgtctaagagaagagtttgag
agggagggacggaagcttcctccaaagcaggagtcacaagtttttgattccaatgtgatc
actcctggaactgactttatggcagtgctgtccattgctttacagtactacattcatctt
agactaaacaatgaccctggttggaaaaatgttaaggtcattctttctgatgccaatgtt
ccgggggaaggagaacacaaaataatgtcctatattcgtcttcagagaaatcttcctggt
tttgatccaaatactcgtcactgcctgtatggtttggatgcagacttgataatgttggct
ttggctactcacgaagtccatttttcaattctgcgtgaggtagtgttcactcccggacag
caagaaaaatgttttctgtgtggccagatgggtcattttgcagctgactgcgagggtaaa
gcgaaaagaaaggctggagagtttgatgagaaaggtgaaaatgttgttaaaaagccttac
cagtttctccacatttggatacttagagagtacttggaacatgaaatgcgtattccgaat
gttccctttgaaatcaaccttgaacgcattgttgatgattttgtgttcatgtgtttcttt
gttggcaatgacttcttacctcatatgcccacattagagattcgggagggtgcaattaac
ttgctattggctgtgtacaagaaagaatttagggcactaggtgggtacttgactgatgga
agcaagccaaatttgcgaagagtggagcatttcattcaagccgttggaagttatgaagat
agaatattccaaaaaagagctagactgcatcagaagcaggcagatagaataaagcgtgaa
aaaggtcagacaagaagaggagatgatgcagagcctcaggttcaaccatccctagttcca
gttgcacgttttcgtgaatctcgtctagcttcaggtccttgtccttcgccatatgaacaa
tcaggatttggaaaagccacgtccaaattacctggactgaaaaataagaataagcaatca
ctggaatctgatgatagcggtccctacgttcaccgtaacaaagttgctcgtccatcatct
ggggcttctattggttctgctattgttgaagcagaaaacactttggaaatagatatccat
gagaacaaaaatgaattgaaggcaaagcttaaagagatactgcgtgaaaagtctgatgtt
ttcaacactgataatgcagaagaagacaagattaaattgggcgtacctgggtggagagag
aggtattataatgaaaagttttctgcaaatactcccgaggaacttgatgacacgcgaaag
gatgttgttttgaggtacacagaagggctatgttgggttatgcactattattatgaaggc
gtctgttcttggcaatggttttatccatatcattatgcaccgtttgcttccgatctcata
ggccttggtgagctggatatatcattcaatctaggcactcccttcaagccattcaatcag
ctactgggtgtcttccctgctgctagcgcacatgcactccctgagaagtatcgaaaactg
atgacagatcagaactcacctatcattgacttctatcctacagattttgaagtggatatg
aatggtaaacgatattcctggcagggtattgccaaactgcctttcattgatgaagcccgc
cttctttccgaggttgacaaaattgagcatacattgacggaagaagaagcgcggagaaat
agtgtgatgtttgacatgctttttgtgacatcttctcaccccctctctgttagtatatac
tcccttgacaaccgctgtaagcagttgagagagagagaacgtattgaggtcaaggaaaaa
atgaaccctgaacatagtggaggaatgaatggctatctctctccatgttcgggagagctc
tgccctcctatattcaggtctccagttgagggcttggaggatattatagataatcaagtc
atatgtgctatatatcgacttccagacgcgcacaagcatatcactcaaccgcccgctggg
gtgaactttcctccaaagattgtgagcatgggtgacatgaaacctgaacctgtattgtgg
catgaagattctggtaggaggcatcatcatgacaacggaagatacaatgatagtacaagg
ccgaatcctcccggggctattacaggtcgacatctaggagatgcagcacatagactcgtt
gccaacagcttgcaggttagggggggagatcgaaagggtcactacaattggcagcaggca
ccctcgctctcccataccgtgcaaccctacatccctgggcatcccccacatccacatatg
gattatcgatcacgagatcaggaagccgattacagaatgccacctggtggcagaccgaac
tactcccaaggtcataaccgaccaatgaatcccaacgcaatgcccagccacctagatgat
gcataccatcagccacgcccagtataccaccatgacccgagacctcattcccaacactac
aatagtagatcacacaatcaaatgaattcccaacattatggtgagaatcctgaagcttat
tacccatctacatcgacatcgtggtctcgtcacggcgatgtgcctccctatcctcctaat
ggaccgacatcccaccaccctccaacttatcaaagtggttacagctacaaccaactcgct
gcagattcgggtatcagtagtcagcaacatcagggacgtgcggggcggcctcctccagca
ggcaacaatggcggcggcggcccacaacagcaatatggaaataataggtattacgcattt
gatagaagaggaaacgggagaccaccttcgtcagcatcacattcacatggccgcaggcag
aaaccatactaa
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integrated database retrieval system
