Cucurbita maxima (winter squash): 111472590
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Entry
111472590 CDS
T05246
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03013
Nucleocytoplasmic transport
cmax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111472590
03015 mRNA surveillance pathway
111472590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111472590
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111472590
mRNA cycle factors
P-body specific factors
111472590
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
111472590
NCBI-ProteinID:
XP_022973974
UniProt:
A0A6J1IG63
LinkDB
All DBs
Position
Unknown
AA seq
513 aa
AA seq
DB search
MKDPLERTKVVIRHLPPSLPHSDLFHNIDDRFAGRYNWCYYRPGKTSQKDQRYARAYIDF
TRPEDVFEFAEFFDGHVFVNEKGAQFKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSLPR
KVKRGGGASSRKPESNSAKRGMEKKKYILKESVKNTNRRDKSNFILVPRREDQLATSGGI
GISDVGIADSGKKKILLLKGKERDISHVSDGMLQLQSVTSTGTSPASASKHNQRREASGS
MIRSILLNNESRHGQTSSGAPSHQKIQILNSDNGKRLPRSINARSGSNDMSSNEPNSSGL
EGDGKRPSDGKPSKKELHGLGSLSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV
AQSSHLLSDSVEAYRGEMKEDIHVSRTGDVTTTVSGRNSSVENGSVRHGGRRGAGHVMKD
DGSLNPNEGKPSKRGVASGHEKQVWVQKSSSGS
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccgttggagcggaccaaagtagtaattaggcacttgcccccttctcttcct
cactcagatctcttccacaatattgatgatcgattcgctggtcgctacaattggtgttac
tatcgtcctggaaagaccagtcagaaggaccagagatatgctcgagcttacatagatttt
acgagacctgaagatgtttttgagtttgcggagttttttgatgggcatgttttcgttaat
gagaagggtgctcagtttaaggctgtagttgaatatgcaccttcacagcgtgttcccaga
tcatcgaccaaaaaggatggtcgtgaggggactatatacaaagatccggattatttggag
tttctcaaacttattgcaaagcctgctgagcatcttccaagtgctgaaatacagttggaa
agaaaagaagcagagcaatctggtgctgcgaaagaaactccgatcgttacccctctcatg
gagtttgttcgccagaaacgagcagttgagagcggaacgcagggatcttcattacctcgg
aaggtcaaaagaggtgggggagcatcctctagaaagcctgagtcgaattccgcaaagcga
gggatggagaagaagaagtatattttaaaggagagtgtgaagaatacaaatcgcagagac
aagtcaaatttcattttggtacccaggcgagaggatcagttagctacctcaggtggaatt
ggaatttctgatgttggtatagctgactctggaaagaaaaaaattctgcttctcaagggg
aaagagcgagatatatctcatgtttctgatggcatgctacagttgcagagcgtgacatct
actgggacttctcctgctagtgcatcaaaacataatcagaggcgtgaggctagtggaagc
atgatcagaagcattcttttaaataatgaatcacgtcatggacagacttcatcaggagct
ccatctcatcaaaaaattcagatcctgaactcagacaatgggaagcgactacctcgttcc
attaatgctcgatctgggtctaatgatatgtccagtaatgaaccaaattcatccggtttg
gaaggggatggaaaaaggccttcagacggtaaacctagtaagaaggaacttcatggcctg
ggtagtcttagcgagaagcaagaaaaacgaataagaaacaaagatagacctgatcgtggt
gtgtgggcgccacgtagtcgttcagatgcttcagtctcacaacttgaggaatcctctgtt
gcacaatctagccatttgctttctgactcagttgaagcataccgtggggaaatgaaagaa
gatattcatgtaagcaggactggggatgttacaactactgtgagtggacgtaacagttca
gtggaaaatggttctgttagacatggtggacgtcgtggggctgggcatgtcatgaaggat
gatgggtcattgaacccaaatgaagggaagccgtccaaaagaggtgttgccagtggtcac
gagaaacaagtatgggttcagaagtcatcttcaggttcttaa
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