Cucurbita maxima (winter squash): 111472846
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Entry
111472846 CDS
T05246
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111472846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111472846
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111472846
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111472846
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
111472846
NCBI-ProteinID:
XP_022974224
UniProt:
A0A6J1IGZ7
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Position
Unknown
AA seq
906 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALLDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELESQIDNFEAEVEGLSVKKGKQRPPRLVHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVDELYSSLPLDKVES
LEDLVAICPPSLVKGTPALNLKTSVATLATQVPVTGAPNLQQNTVIPDQVDDSTLPDGNT
DTLLKNPPPKNSVLGSSAATSPTGNHATSASLNGAGHGSALSVTSAILPGSSAVRAVLET
TGASNSSPVNMPNSAKDEEIASFPGHKLSPSFSDSGLVRGGMGRAVIANQPPSTSSHTSG
IVVPSTIILGSVPSTSEVTMRNIMGAEERAGNSGMVQSMVSPLSNRIVLPTAAKVSDGTT
TVDPSNVSDAAVIGGRVFSPSVVPSMQWRPGSSFQNPNEGGQFRGRAEIAPDQREKFLQR
LQQVQQQGHSTLLGMTLGGGNHKQFSSQQQSSLLQQFNSQNSSVTSQAGLGIGVQAPGVN
AVTSGSLQQQPTSFQQSNQQALMTTGAKDSDVAHSKVEEEQQQQHQQQGLPEDTNDSASA
SASASVLGKNLMNDDDLKGSYAVDTPAGVPASLTETASVSREDDLSPGQPLQPGQPSGSL
GVIGRRSVSDLGAIGDSLGGSSMATGGMHDQFYNLQMLEAAYYKLPQPKDSERPRSYTPR
HPAITPPSYPQVQAPIINNPAFWDRLGLETYGTDTLFFAFYYQPNTYQQYLAARELKKQS
WRYHRKYQTWFQRHEEPKVATDEYEQGTYVYFDFHVNNDDLQHGWCQRIKTEFTFEYNYL
EDELNI
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcggaagctccaaggggaaattgaccgagttcttaagaaggtacaagaa
ggggttgacgtctttgacagcatttggaacaaggtttatgataccgacaattccaaccag
aaggagaaatttgaggcggacttgaagaaggaaataaagaagcttcagaggtacagggac
caaatcaagacctggattcagtccagcgagattaaggataagaaggtcagtgcctcttat
gagcaggctttgttggatgctcgtaaacttattgagcgtgaaatggaaagatttaagatt
tgtgaaaaggagacaaaaactaaagccttctcgaaagaaggtttgggtcaacaacctaaa
actgatccaaaggagaaggcgaaatcagagacacgggattggttgaacaatgtggttagt
gagttggaatctcagatagataactttgaagctgaggtcgagggtctgtctgtgaagaag
gggaaacaaaggccacctaggttggttcatcttgaaacatccattacccggcacaaggct
catataatgaagctggaactaatcttgagactgcttgataacgatgaattgagtcctgag
caagtcaatgatgtcaaggacttcttagaagattatgtggaaaggaatcaggaggatttt
gatgaatttagtgatgtggatgagctttacagctcattgccactcgataaggtggaatcc
cttgaagatctggttgcaatttgccctcccagccttgtgaagggtacaccagctctcaac
ttgaagactagtgtggcaacgttggcaactcaagtgcctgttactggtgctcctaatctt
caacaaaatactgttattccagatcaggttgatgattcaaccttgccagatggtaacaca
gacactcttttgaagaacccacctcctaagaatagtgtccttggttcttctgcggctaca
tcacccaccgggaaccatgctacctcagcatccttgaatggtgcagggcatgggtctgcc
ttgtccgttacatcagccattcttccaggttcaagtgctgttcgtgctgtattggagact
acgggtgcttctaattcatctcctgtaaatatgcccaattctgcgaaggatgaagaaatt
gctagcttcccaggccataaactatctccatcattttcggattctggacttgtaaggggt
ggcatgggaagagctgtcattgctaatcagccaccctccacttcctcccatacttctggt
attgtggttcctagcactataattcttggtagcgttccttctacatctgaagtgacaatg
agaaacattatgggagctgaagaacgggctggtaacagtggcatggttcagtccatggtt
tcccctttaagtaatagaatcgttttgcctacagcagctaaagttagtgatggaacaact
acagttgatcctagcaatgttagtgatgcagcagttataggtggtcgggttttctctcca
tctgtggttcctagcatgcagtggaggccaggaagttcttttcaaaatccgaatgaagga
gggcagtttcgtggaagagctgaaatagcaccagatcagagggagaagttcttgcagcgc
ctccaacaagttcagcaacagggccatagtacacttcttggcatgactcttggtggagga
aatcacaagcaattttcttcacaacagcaaagttcacttcttcagcagttcaactcccaa
aattcatctgttacttctcaagctggtctgggaataggagttcaagcacctggagtaaat
gctgttacctctggctcattacagcagcagccaacttccttccagcagtctaatcagcaa
gcattaatgacaactggggcaaaagattctgatgttgcccattcaaaagttgaggaggag
cagcagcagcaacaccagcaacaaggtttacccgaggatactaatgattctgcttctgct
tctgcttctgcttctgtccttggaaagaatctgatgaatgatgatgacttaaaaggatca
tatgcggtagatactccagctggtgtacctgcttcattgaccgagactgcttcagtgtca
agagaagatgacctttctcctggtcaacctttgcagcctggccaaccttctggaagtctt
ggtgtcattggccgaagaagtgtttctgacttgggtgccattggtgatagccttggtgga
tcctcgatggctactggaggaatgcatgatcaattctacaatttgcaaatgcttgaagct
gcatactataagctacctcagccgaaagactcagagcgtccaaggagttatactccaaga
caccctgcaattactcctccgagctatcctcaagtacaggcacctattataaacaatcct
gctttttgggatcgattaggtctcgagacctatggcactgacacattgttctttgcattt
tactatcaaccgaacacctatcaacaatatttggctgctagagaattaaagaaacaatct
tggagatatcacagaaaataccagacatggttccaaagacatgaagagccaaaagttgct
acagatgaatatgagcagggaacttatgtgtacttcgattttcatgttaataatgatgac
ctacaacatggatggtgccaaaggattaaaactgagttcacttttgagtataactacctt
gaagatgaactcaatatatag
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