Cucurbita maxima (winter squash): 111472961
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Entry
111472961 CDS
T05246
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cmax
Cucurbita maxima (winter squash)
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmax03036
]
111472961
Chromosome and associated proteins [BR:
cmax03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111472961
microRNA pathway
RISC loading complex
111472961
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
dsrm
DND1_DSRM
DEAD
Helicase_C
ResIII
Dicer_dsRBD
Dicer_PBD
SNF2-rel_dom
SWI2_SNF2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111472961
NCBI-ProteinID:
XP_022974324
UniProt:
A0A6J1IHA2
LinkDB
All DBs
Position
Unknown
AA seq
1971 aa
AA seq
DB search
MEDDTRTPGSFAADPTCSSGVSSFWLDACEDISCELINDFVDFHASIAPESSVENTSVQH
NLANXCNGDRDGTVGEDFYIENQASGARDMLVDTSTMQANGVQIEILQCNELSKDSFGDG
SRICKGDESESGFKQPNGCEGLSVVETPNRNGVQKHEESNNVPLRDWGCDNEERSNKRPR
FSNGNNERHYSNRGQCPSRDREKFVSRKRLRERDESDRRDRGYYRRREHYGTSGRDARDR
DSREREQKGYWERDKSGSNEMIFHSGMWEADRNREAMTDNEKNQEFQGTTDRSSEETKEK
IPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSISNDLQIQNKKMLAVFLV
PKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILR
HSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSN
QIDCAIKIRNLESKLDSTVCTITDRKELEKHVPMPSEVVVEYDKAATLWSLHEQIKQMEV
EVEEAAKLSSRRSKWQLMGARDAGSREFLRHVYGVSERTESDGAANLIQKLRAINYALGE
LGQWCAFKVAQSFLTALQNDERANYQLDVKFQESYLNKVVALLQCQLSEGAVSDKDCKAS
NSDEDVANNISDHDEIEEGELLDSHVDSGGEHVDEIIGAAVADGKLTPKVQSLVKILLKY
QHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKSASLIGHNNSQDMRTCQMQDTISRF
RDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGN
LSHAAFLRNARNSEETLRKEAVERTDLSHLENTSRLISMDTTRGTVYQVESTGAVVSLNS
SVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEELEGPICSS
MRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEREKVEQKDDGDPLPGTARHIFYHLM
EGAWFYLXGDWILTGRDTFNGSKLLHLYMYTVRCVNIGSSKDPFLTQVSNFAVLFGNELD
AEVLSMSMDLFIARTITTKASLIFRGMCDITESQLVSLKSFHVRLMSIVLDVDVEPTTTP
WDPAKAYLFVPVVGDKSEDPVKEIDWDMVQRIIQTDVWSNPLQRARPDVYLGTNERALGG
DRREYGFGKLRHGMAFGQKYHPTYGIRGAVAQFDVVKASGLVPDRGGVVELQRHTDLPKG
KLLMADSSMAAEDLVGRIVTAAHSGKRFYVDSICYDMTAENSFPRKEGYLGPLEYSSYAD
YYKQKYGVELVYKHQPLIRGRGVSYCKNFLSPRFEHAESHEDESEETLDKTYYVYLPLEL
CLAHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKHMINYPVPSSKVMLIXTAASCQETFC
YERAELLGDAYLKWVVSRFLFLKFPRKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQA
DRFAPSRWAAPGVLPVFDEDTKDGESSFFDQDKSNSDGVIEMDHHLDAFEDGEVEDREVE
SDSSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMRWIGIKVEFDADEVECATRPSN
LPESILRSVDFDALEGALNIKFQDRGLLVEAITHASRPSCGVSCYQRLEFVGDAVLDHLI
TRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHSLHIHLRHGSSALEKQIRDFVKEV
QDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAAVWRVFQPLLHPLVTPE
TLPMHPVRELQERCQQQAEGLEYKATRSGNLATVEVFIDGVQIGVAQNPQKKMAQKLAAR
NALAVLKDKEMDEAKEKMEDNNGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGP
AHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS
NT seq
5916 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgatactaggactccaggaagttttgccgccgacccaacttgttcatctggg
gtttcttctttctggcttgatgcctgtgaggacatttcctgcgaactcatcaatgatttt
gtggatttccacgcgtctattgctcccgaatcctcagttgaaaacacttccgttcaacac
aacctcgccaacngatgcaatggcgatcgtgatggcactgttggggaagacttttatatt
gagaaccaggcatctggggctcgtgatatgctggttgatacctcaactatgcaggcgaat
ggcgtacagattgaaattcttcaatgtaatgagctgagcaaggatagttttggtgatggt
agtcgtatctgcaagggcgatgaatctgagagtgggttcaagcaaccaaatggatgcgaa
gggcttagcgttgttgaaacccctaacagaaatggagttcaaaaacatgaggagagtaat
aatgtgccgttgagagattggggttgtgataatgaagaaagaagcaataagaggcctcgt
ttcagcaatggcaacaatgaaaggcattactcaaacagggggcagtgtccatctagggat
agagaaaagtttgtctctagaaagaggttgcgtgagcgagatgagagtgatagaagggat
agaggttattataggaggagagagcattatggaacaagtgggagggacgcaagagatagg
gactcgagggagcgggaacaaaagggttattgggagagggacaaatcaggatcaaatgag
atgatttttcactcaggtatgtgggaagctgatcgtaacagagaagcaatgactgataat
gaaaagaatcaggaattccagggaactacagatagaagttccgaggaaactaaggaaaaa
atccccgaggaacaagctcgtcaatatcagttggatgttcttgaacaagcgaagaagaaa
aatactatagcttttcttgaaactggtgctgggaaaacacttattgctgttcttctgatt
aaaagtatttccaatgacttacaaatacaaaataagaagatgcttgctgtatttttagtt
cccaaagttccacttgtctatcagcaagctgaggttattcgcgagagaactggctatcaa
gtaggtcattactgtggtgaaatgggtcaagatttttgggatgctagaaggtggcagcgt
gaatttgaaactaaacaggttctggttatgacggcacaaatactgttgaacattttgagg
catagcataataaaaatggaagcaatcaatctactgatcttggatgagtgccatcatgct
gttaagaagcatccctattctttagttatgtctgaattttatcataccacaccaaaggag
aagagaccatctgtatttggaatgactgcttcgcctgttaatttaaagggtgtttcaaac
caaatagattgtgcaattaagatccgtaaccttgaaagtaaattagactccacagtctgc
actataacagaccgcaaggagttggaaaaacatgttccaatgccatcagaagttgtggtg
gagtatgacaaagctgccactttgtggtcccttcatgaacagataaagcaaatggaggtg
gaagttgaggaagctgcaaaattgagttctaggagaagtaaatggcaacttatgggagct
agggatgctggttctagggaatttctgcgccatgtttatggtgtttctgagagaactgaa
agtgatggtgctgctaacctaatacagaagttgagagcgatcaattatgcacttggggag
ctgggtcagtggtgtgcttttaaggttgcgcagtcttttttgacagctttacagaatgat
gagagggctaactatcaacttgacgtcaagtttcaggagtcctatttgaacaaagttgtt
gctcttttacaatgccagctatcagaaggagctgtttctgacaaagattgcaaagcttca
aattcagacgaagatgttgcaaataatatatcagatcatgacgaaattgaggaaggagag
cttcttgacagccacgttgactctggtggggagcatgtagatgagataataggagctgct
gtagctgatggaaaattgaccccaaaggtgcaatcactcgttaaaattctgctgaagtat
caacatactgaagatttccgtgccataatctttgttgaaagggttgtgtctgccttggtt
cttccaaaggtctttgctgaacttccttctctaagttttgtaaaaagtgcaagcttgatt
ggtcacaacaatagtcaagatatgcggacatgtcaaatgcaggacactatatccagattc
cgcgatggtcgtgtgacactattagttgctactagtgttgctgaagaaggacttgatatc
cgacaatgcaatgttgtgatccgctttgaccttgcaaaaacagttttggcatatattcag
tctagaggacgtgctagaaagcctggttcagattacattttaatggttgagaggggaaat
ttgtcacatgcagcttttttaaggaatgccagaaatagtgaggagaccctgcgtaaagaa
gcagtggagagaactgaccttagtcatcttgagaatacttcaaggttgatttccatggac
acaacacgaggtaccgtgtatcaagttgagtcaacaggtgccgtcgttagcttaaattct
tctgttggtcttgttcatttctactgctcacagcttcctagtgacaggtattccattctt
cgacctgagtttgtgatggtgaggcatgagaaaccaggtggtccaactgagtactcttgc
aagcttcaacttccttgtaatgcaccatttgaggaacttgagggtccaatttgcagctca
atgcgccttgcacaacaggctgtttgtttggctgcttgcaaaaagctccatgaaatggga
gcatttactgacatgctcttgccagacaagggaagcggagaggagagggaaaaggttgaa
cagaaagatgatggagatccacttcctgggactgctaggcacatcttttatcatttaatg
gagggtgcatggttctatttatagggagattggatattaactgggcgcgatactttcaat
ggttccaaattgctccatctttatatgtacactgttcggtgtgtcaacattggctcttct
aaagatccattcttgactcaagtttccaattttgcagtactttttggcaatgagctggat
gcagaggtgttatcgatgtcgatggatctttttattgctcgaactatcactaccaaggcg
tctcttatcttcaggggtatgtgtgatattactgagagccagttggtatccctcaagagc
tttcatgtaagattaatgagcattgtgctggatgtggatgttgagcctactaccactcct
tgggatcctgccaaggcttatttatttgtccctgttgttggtgataagtctgaagatcca
gtgaaagaaattgattgggatatggttcaaagaataattcagacagatgtctggagcaat
ccccttcagcgtgctcggccagatgtctatctgggcacaaatgagcgagcattaggtggc
gacagaagggaatatggatttggaaaactccgtcatggtatggcatttggacagaaatat
catcccacctatggtattagaggagcagtggctcagtttgatgttgtgaaggcttctggt
ttggtacctgaccgaggaggggttgttgaactgcaaaggcacacagatctacctaaaggc
aaacttttgatggctgattcttctatggctgcagaagatttggtagggaggattgtaaca
gctgcgcactcggggaaaaggttttatgtggactccatttgctatgatatgactgcagag
aattcctttcctaggaaggaagggtatctcggtcccctggaatacagctcatatgccgat
tattacaagcaaaagtatggagttgaactggtatataagcatcagcctttaataagggga
cgcggtgtctcatattgcaagaatttcctgtcccctcggttcgaacatgcagaaagtcat
gaagatgaatctgaagaaactcttgacaaaacatactacgtttacctccccctggagctc
tgtctggcacatccactgcctgggtcacttgttcgtggtgcacagagattaccgtctatc
atgaggagagttgaaagcatgctgcttgctattcagttaaaacatatgataaactaccct
gttccttcctctaaggtaatgcttatctagactgctgcctcatgccaggagacgttctgc
tatgaaagagcagaactgcttggagatgcttatctaaaatgggtggttagtcggttcctt
tttctaaaattccccagaaaacacgagggccagcttactagaatgaggcaacaaatggtc
agtaacatggtcttgtatcaatacgcattgagcaaaggactccagtcttatatacaagca
gatcgttttgctccatctcgatgggctgctcctggtgtgcttcctgtctttgatgaagat
acgaaggatggagaatcatccttctttgatcaggataaatcaaattctgatggtgttatt
gagatggaccaccatcttgatgcttttgaagacggtgaggtggaggatagagaggtagaa
agtgactctagttcttatagagtcctttctagtaaaactcttgctgatgtcgtcgaagca
ctcattggagtttattatgttgaagggggaaaaattgctgctaaccaccttatgagatgg
atagggattaaggtcgaatttgatgcagatgaggtcgaatgtgcaacaagaccatctaat
cttccagagagcatacttcgaagtgttgattttgatgctttagagggtgccttgaacatc
aagtttcaagaccgtggtttgctggtagaggctatcactcatgcttcccgaccatcttgt
ggagtttcatgttatcagcggttggaatttgttggtgacgcagtattagatcatctgatc
actaggcacttgttctttacatacacagatctacccccaggtcgtttaactgacttgcgc
gctgctgctgtaaacaatgaaaattttgcacgagttgctgttaaacatagtctccatatt
catcttaggcacgggtcaagtgctcttgaaaagcagattagggacttcgtgaaggaagtt
caagatgaattatcaaaacctggttttaactcctttggcttgggagactgtaaagctccg
aaagttcttggtgatattgttgaatccattgctggtgctatttttctcgatagtggacgt
gacactgccgctgtctggagggtatttcaaccactgttgcatccattggttacacccgag
acacttccgatgcatcctgtccgtgagctgcaagaacgatgccaacaacaggcagaaggt
ctggagtacaaagcaactcgcagtggcaatttggccactgtcgaagttttcattgatggg
gtccagattggagttgctcagaatccacagaagaagatggcacagaaactagctgcgagg
aatgcgcttgctgttttgaaggataaggaaatggatgaagccaaggaaaagatggaagac
aacaacgggaagaagaagaagaatggcaatcaaacgtttaccagacaaaccttaaatgat
atttgtctgcgtagaaattggccgatgccattttacaggtgtgtgaatgagggtggccct
gcacatgcaaagaggtttacctttgcggttcgggtaaatactacagacaggggatggaca
gatgaatgcgtgggagagcctatgcctagtgtcaaaaaggccaaggactctgctgctgtt
ctgttgctggagctattgaataaattatactcgtga
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integrated database retrieval system
