Cucurbita maxima (winter squash): 111473208
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Entry
111473208 CDS
T05246
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03040
Spliceosome
cmax04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111473208
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111473208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmax03041
]
111473208
04121 Ubiquitin system [BR:
cmax04121
]
111473208
03400 DNA repair and recombination proteins [BR:
cmax03400
]
111473208
Enzymes [BR:
cmax01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111473208
Spliceosome [BR:
cmax03041
]
Complex B
Other components
Prp19 complex
111473208
Complex C
Prp19-CDC5 complex
111473208
Ubiquitin system [BR:
cmax04121
]
Ubiquitin ligases (E3)
U-box type E3
111473208
DNA repair and recombination proteins [BR:
cmax03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
111473208
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_EML
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_WDR75_1st
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_WDR41
PROPPIN
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_Aladin
Beta-prop_DCAF12
U-box
Beta-prop_SPT8
zf-Nse
Beta-prop_VPS8
PAS_11
KNTC1_N
PUMA_CC
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
111473208
NCBI-ProteinID:
XP_022974542
UniProt:
A0A6J1IAJ6
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MNCSISGEIPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLSIDDIVPIKTGKIVK
PRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKXT
SNAAVNVNGKRVNEDEELGPDGKKLRPGISATVISELTDCNASLSQQRKKRQIPPTLVPV
EALESYTQISSHPLHKTNKPGIISLDINHEKDVIATGGLDTNAVLFDTNAVLFGRSSGEI
LSTLSGHSKKVTSVKFVTRDDFILTGSADKTVRVWQPSDGGNYNCRHILKDHTAEVQAVT
VHATNNFFVTASLDNTWCFYDLASGLCLTQVAEASGTEGYTSAAFHPDGLILGTGTSEAL
VKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYD
SETPTNSVEFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGTDA
KYLAVGSMDRNLRIFGVPGEDGPMET
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaactgctctatctccggcgagattccggaagagccagttgtctctaagaattctgga
ttactcttcgagaagcggttaatcgagaggcacattttagactatgggaaatgccctgtt
acaggcgaacctctttccattgatgacatcgttccaattaaaactggaaagatagtcaag
cccaggcaagctgctagcatccctggaatgcttggaatgttccagaatgaatgggatgtt
ttggtgctgtccaattttgcactggagcaacagttgcatacagccagacaggaacttagt
catgccttatatcagcatgatgcagcctgtcgtgtaattgcaagacttaagaagngaaca
tccaatgctgctgtcaatgttaatggcaaaagagttaatgaggatgaggaattgggtcct
gatgggaagaaactacgtccaggaatatcagccactgttatctctgagctcacagattgt
aatgcttccctttcacaacaaaggaagaagcggcagatacctcctacgttggttcctgtt
gaggctttagaaagttacacccagatttctagtcatccacttcataaaacaaacaaacca
gggattatatctcttgacatcaatcatgagaaggatgtcattgcgactggagggctggac
acaaatgctgttctttttgacacaaatgctgttctttttggtcgatcatctggggagatt
ttatctacactgagtggtcattcaaagaaggtaacaagtgtcaaatttgtcacccgagat
gattttatcttgactggttcagctgacaagactgtccgtgtgtggcaaccatctgatggc
gggaactataattgtagacacattttaaaggatcacacagctgaggtccaagctgttacc
gtccatgctaccaacaacttctttgttactgcctcccttgataacacatggtgtttttat
gaccttgcttcaggattatgcctaacccaggttgcagaggcttcaggaacggagggctac
acatctgctgcctttcatcctgatggactcatccttggaaccggcacgtcagaggccctt
gttaaaatttgggatgtaaaaagtcagaaaaatgttgctagatttgatggacacgttggg
gcagtgacagctatatcattttctgaaaatggttacttccttgcgactgcagctcatgat
ggagtaaagctgtgggaccttcgaaaattgaagaacttccgtacatttgcaccttatgat
tcagaaactccaacaaactccgtggaatttgaccatagtggatcttaccttgcaattgct
ggctcagatataagagtttaccaagttgctagtgtgaaatctgaatggaattgcatcaaa
actattccagatttatctggcacaggtaaagcaacctgcctaaaattcggaacggatgca
aaatacttggcagtcggatccatggatcgaaatcttcggatttttggtgtgcctggggaa
gacgggccgatggagacataa
DBGET
integrated database retrieval system
