KEGG   Cucurbita maxima (winter squash): 111474057
Entry
111474057         CDS       T05246                                 
Name
(RefSeq) sm-like protein LSM4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
cmax  Cucurbita maxima (winter squash)
Pathway
cmax03018  RNA degradation
cmax03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmax00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111474057
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111474057
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmax03019]
    111474057
   03041 Spliceosome [BR:cmax03041]
    111474057
Messenger RNA biogenesis [BR:cmax03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111474057
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     111474057
Spliceosome [BR:cmax03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    111474057
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 111474057
NCBI-ProteinID: XP_022975088
UniProt: A0A6J1ID83
LinkDB
Position
Unknown
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD
GAKAASGGRGKGGSGGKPGANRVGGRGRG
NT seq 450 nt   +upstreamnt  +downstreamnt
atgcttcccctttctctcctaaagactgcccaagggcatccaatgttggtggagttgaaa
aatggtgagacttacaatggccatctggttaactgcgatacgtggatgaacattcatctt
cgggaagtcatctgtacatctaaagatggtgaccggttttggcgaatgcctgaatgttat
atccgtggtaatacaatcaagtatttgcgagttccagatgaggttatcgataaagttcag
gaagaaaccaaaagccgtacagataggaaacctccaggtgtagggcgtggaagaggaaga
gggcgtgaggatggtcccggtggaagaccatctaaaggaatggggcgaggctttgatgac
ggtgctaaagctgcttctggaggccgtggaaagggtggctccggtggaaaacctggtgcc
aacagagttggaggcaggggccgagggtga

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