Cucurbita maxima (winter squash): 111474057
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Entry
111474057 CDS
T05246
Name
(RefSeq) sm-like protein LSM4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
cmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111474057
09123 Folding, sorting and degradation
03018 RNA degradation
111474057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111474057
03041 Spliceosome [BR:
cmax03041
]
111474057
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111474057
mRNA degradation factors
5'-3' decay
Lsm complex
111474057
Spliceosome [BR:
cmax03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111474057
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
111474057
NCBI-ProteinID:
XP_022975088
UniProt:
A0A6J1ID83
LinkDB
All DBs
Position
Unknown
AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD
GAKAASGGRGKGGSGGKPGANRVGGRGRG
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctttctctcctaaagactgcccaagggcatccaatgttggtggagttgaaa
aatggtgagacttacaatggccatctggttaactgcgatacgtggatgaacattcatctt
cgggaagtcatctgtacatctaaagatggtgaccggttttggcgaatgcctgaatgttat
atccgtggtaatacaatcaagtatttgcgagttccagatgaggttatcgataaagttcag
gaagaaaccaaaagccgtacagataggaaacctccaggtgtagggcgtggaagaggaaga
gggcgtgaggatggtcccggtggaagaccatctaaaggaatggggcgaggctttgatgac
ggtgctaaagctgcttctggaggccgtggaaagggtggctccggtggaaaacctggtgcc
aacagagttggaggcaggggccgagggtga
DBGET
integrated database retrieval system