Cucurbita maxima (winter squash): 111474365
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Entry
111474365 CDS
T05246
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111474365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111474365
03036 Chromosome and associated proteins [BR:
cmax03036
]
111474365
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111474365
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
111474365
mRNA degradation factors
5'-3' decay
Decapping complex
111474365
Chromosome and associated proteins [BR:
cmax03036
]
Eukaryotic type
Gene silencing
piRNA pathway
111474365
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
111474365
NCBI-ProteinID:
XP_022975246
UniProt:
A0A6J1IDM5
LinkDB
All DBs
Position
Unknown
AA seq
448 aa
AA seq
DB search
MVNVFEFLFLVSSICLSASVLDFGKLYCLAQIETDYYHLCIFFICSSQDWKARLKIPPPD
TRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKN
GTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKNLNIQVMVTTGGT
SLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLIMDEADKLLSPEFQPSIEQL
IRFLPANRQVLMYSATFPVTVKDFKDRYLHRPYIINLMDELTLKGITQFYAFVEERQKVH
CLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG
ACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDR
FNLYRIEQELGTEIKQIPPHIDQAIYCR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatgtttttgagtttctattcctggtttcatctatctgtctgagcgcctctgtt
ttggattttggcaagttgtattgcttggctcagatagaaactgattattatcatttatgc
attttttttatctgcagttcacaagattggaaggctaggttaaagattccaccacctgat
acacgatataaaacagaggatgtgacggctaccaaaggaaatgaatttgaggactatttt
ctaaaacgtgaattactcatgggaatctatgagaaaggctttgaaagaccatctcctatt
caagaagaaagtattccgatcgctttaactggtagtgatattcttgctagagcgaagaac
ggaactggaaagacagctgcattttgcattcccgccttagaaaagattgatcaggataac
aatgtaatccaagttgttatcctcgttccaactcgagagttggctcttcaaacttcacaa
gtgtgcaaggaactcggaaagaatttgaatattcaagttatggttacaacaggtggtacc
agtttaaaggatgatatcatgcgactatatcaaccagttcatttattagttggaactcca
ggaagaatattagatcttgcaaaaaagggtgtttgtgtgctgaaagattgttctatgctt
atcatggatgaggcagacaagctcttgtctccagagttccaaccctcaatagagcagctg
atacgctttttgcctgcaaatcggcaggttcttatgtattccgctacctttcccgttact
gtgaaggacttcaaagatagatatcttcacaggccctatattataaacttaatggacgag
ctcactctaaagggtatcacccaattctatgcatttgttgaagaaagacaaaaagtgcac
tgccttaatactcttttctctaagctgcaaattaaccagtcaattatcttctgcaattcg
gtaaatcgagttgagttgttagccaaaaaaattactgaacttggttattcttgtttctat
attcatgcaaagatgctgcaagatcatcgtaacagagtatttcatgacttccgaaatggt
gcatgcagaaatctcgtttgtactgatttatttacaagaggaatagacattcaagcagta
aacgtcgttattaacttcgatttccccaagaattcagagacgtatctacacagggttgga
cgatctggaaggtttggacaccttgggttagctgtgaatttaatcacctatgaggatcgt
ttcaatttgtacaggattgaacaagaacttggaacggaaataaaacaaataccaccccat
attgaccaggcaatctactgccggtaa
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