Cucurbita maxima (winter squash): 111474469
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Entry
111474469 CDS
T05246
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111474469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111474469
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
111474469
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_16
TPR_17
TPR_14
TPR_8
TPR_CcmH_CycH
TPR_12
TPR_9
TPR_19
ARM_TT21_C
TPR_7
BTAD
TPR_10
Motif
Other DBs
NCBI-GeneID:
111474469
NCBI-ProteinID:
XP_022975311
UniProt:
A0A6J1IDT6
LinkDB
All DBs
Position
Unknown
AA seq
1216 aa
AA seq
DB search
MVKETECCDVPGLTPAASEPEIEKAYHIKEEVAVEKDHVRESGTPYITSRQLQDTVNAHP
DDPSSHFKLGIFLWENGGSHDKAVAADHFLKSAKLDPQNAAAFKYLGDYYATFSVDIERA
LKCYQRAVSLDAHDLHSGEALCNLLHREGKESLEVAICKEASSKSTRAFWAFRRLGYLQV
FQKKWTEAVLSLQHAIRGYPSCADLWEALGLAYQRLGRFTAAIKSYARAIEIEGDRILAW
VESGNIFLMLGLFKKGVEHFQRALEISPKSITAQFGLSSGLLGLAKECINRGAFKWASFL
LEEASKVARGSTYLAGNLSCIWKLLGDIQHTYAKCYPWMEEDWGLCAESFRTSILSWKKT
RSLALLSAKCSYQQALHLAPWEANIYTDIAITLDIISTLNGDSGSEFNSWQISEKMTLGA
LMLEGDNHEFWVAMGCISNHDALKQHAFIRALQLDGSLAGAWAYLGKLYRNRGEMQLARQ
AFNYARSIDPSLAIPWAGMSADLNIRESTSDEAFESCLRAASILPVAEFQIGLAKLSLQA
GHLSSPQVFGAIRQAVQLAPCYPESYNLNGLAFEAQLDYQSAVAAYRLAHLTTSHFSDTV
PRSHVRDISINLARSLCMVGNFFEASQEYENLSKEGMLDIEGLQVYAFSLWKLGKNDQAL
STVRTLASCISTMEKTRTAASVGFICRLLYSISGLDSAINSIMKMPTHFFRSSKVSFVVA
AIQAIDGCDRLDSIVLSCRSCLQSHEEITKMHILIALSKLIKHQTDNCLGFHSGVMHLRK
ALHAYPNSSLMRNLLGYLLLSNEERDDNHTATRCCNMLYGFDQQNKCLKSAYEIHGAGAV
ACYTIGTSHPRFSFPTCSYQCQNGIGTIRQLQKCLRQDPWNYDARYLLILNILQKAREER
FPCHLRATVERLILVAFSNEPYFNKDTSHQYKKFQLLLCASEISLQGNDQIKCINYAKAA
SSISLSDNYLFYAHLLLCRAYAAENDSNNLRNEFIKCLDLKTDNYLGWVCLKFIASRYEL
HVESNSLELSFKKGSVEIKDLQHVVIPVSSLVDGLISFWSQDFMAAEKYFAQACSSGRDD
GCLLLCHGVTCMVLAKQLCSPHFLRLAVNSLLKAQVISVVPIPMVSITLAQAEGSLGLKE
NWESGLRFEWFSWPPDMRPAELLFQMHLLAKQSKVGPDQLRVELCQSPLRWVLRAIHVNP
SCMRYWKVLQSLWNEG
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggagacggaatgctgtgacgtgcctggactcacccccgccgcttcagaaccc
gaaatcgagaaagcttatcacatcaaggaagaggttgcagtagaaaaagatcatgtaaga
gaatcggggaccccttatattacatcaagacaattgcaagatacagttaacgctcatcca
gatgacccctcctcccatttcaaactcgggattttcctgtgggaaaatggcggaagccac
gataaggcggttgctgcggatcattttctgaaatcagcgaaactagaccctcagaatgct
gctgcttttaaatatctaggggattattatgccacattttctgttgacatcgaaagggct
ctcaagtgctaccagagagctgtcagtcttgatgctcatgatctccactctggagaagca
ttgtgcaatctgttgcatcgtgaaggaaaggagagtttagaggttgctatatgcaaagag
gcttcctctaagtcaactcgagccttttgggctttccggaggttgggctatttgcaggtt
tttcaaaagaagtggactgaagccgtcttaagtcttcagcatgccattcgaggatatcct
tcttgtgctgatttgtgggaagccctgggtcttgcatatcagcgtcttggccggtttact
gctgcaattaagtcatatgcacgggccattgaaattgaaggagatagaattcttgcttgg
gttgagagtggaaatatcttcttgatgcttggtttgttcaaaaaaggagttgaacacttt
cagcgagctctagagatatcacctaaaagtattactgcacaatttgggctctcttcaggg
ctgcttggtttggcaaaggaatgcattaataggggggcgtttaaatgggcatcctttctg
ttagaggaagcatctaaagttgcaagaggaagtacatatttagctgggaacttgtcgtgt
atctggaagttgcttggagatattcagcatacgtatgcaaaatgctatccatggatggaa
gaggactgggggctatgtgcagaatcttttagaacttctatcctttcctggaagaagact
cgcagtttggctttattgtctgccaaatgttcctatcagcaagctctacacttggctccg
tgggaagctaacatttacacagatattgctattactttagatattatttcaactttgaat
ggtgattctggatctgaattcaattcctggcagatatctgaaaagatgacattaggggct
ttgatgctcgagggtgacaatcatgaattttgggtggcaatgggatgcatctctaaccat
gatgcgttgaagcaacatgcttttataagagcattacagttggatggatcgctggctgga
gcctgggcttatcttgggaagctatacaggaataggggagagatgcaattggcaagacag
gcatttaattatgccagaagtatagatccatctctggcaataccctgggctggcatgtcg
gctgatttgaatattagggagtccacatcagatgaagcatttgagagctgtttgagagct
gcatcaatactaccagtggcggaatttcaaattggacttgccaagctttctctgcaggca
ggccatctttcatctccacaggtgttcggggctatacgtcaggctgttcaacttgcacct
tgttaccctgaatcctataatctaaatggactagcttttgaggcacaattggattatcaa
tctgctgttgctgcttatcgtctagcacacctcacaactagccatttttcagatacagtt
ccaaggtctcatgtcagagatatatccatcaacttagccagatcactctgcatggtagga
aatttctttgaagcttcgcaggaatatgaaaatttgagtaaagaaggcatgcttgacatt
gaaggtctgcaggtgtatgctttctcattatggaaactaggaaagaatgaccaggccctt
agcaccgtgagaacccttgcttcttgcatctctaccatggaaaaaacacgtactgctgca
tctgttggtttcatatgcagattgttgtattcaatatctggattggattccgcaatcaac
agtatcatgaagatgccaacccattttttccggagttcaaaagtgagctttgtagtggct
gctattcaagccattgatgggtgtgatcggcttgactccattgttctaagctgccgttcc
tgcctccagtctcatgaagagataactaaaatgcacattttgattgcactttctaagctg
atcaaacatcaaacggataactgcctgggattccatagtggagtgatgcatcttagaaaa
gctcttcatgcataccccaacagtagtttgatgaggaacttgcttggttatcttttgcta
tccaacgaagaaagagatgacaatcacacagctactaggtgctgcaacatgttgtatggt
tttgatcaacagaacaaatgtctgaaatctgcatatgaaattcacggtgctggagctgtg
gcctgctatacaatcggcacgagtcatccgaggttttctttcccaacatgttcataccag
tgtcagaatgggattgggaccattcgacagcttcaaaaatgcttacgtcaagacccatgg
aattatgatgctcgatatcttcttatactaaacattctgcagaaggcacgtgaagaaaga
tttccctgtcatctacgtgcaactgttgagcggctaatcttggttgccttttccaatgag
ccatattttaataaagatacatctcatcaatataaaaagtttcagctgctactttgtgca
tctgagatcagtttacaaggcaatgaccaaattaaatgcatcaactatgccaaagctgct
tcctctatttcactttcagacaattatcttttttatgcacatttgttactgtgccgagcc
tatgctgcagaaaatgattctaacaacctccgtaatgaattcataaaatgtttggattta
aagacagataactatcttggatgggtatgtcttaaattcattgcatctcgatatgagctt
catgttgaatccaatagcttagaacttagtttcaagaaaggatcagtagagatcaaggat
ctgcaacacgtggtaatacccgtgtctagtctggtggatggtttgatatctttttggagc
caggattttatggctgctgagaagtattttgctcaagcttgttcctcgggacgtgatgat
ggctgtctcctcctctgtcatggtgtaacctgcatggtacttgcaaagcagctttgcagt
cctcatttcttgaggctggctgtgaacagcctccttaaagctcaagtaatttccgttgtt
ccaataccaatggtctcgatcacactggctcaagcagaagggagtcttggtttgaaagaa
aattgggaatcaggccttcgttttgaatggttctcgtggccaccagatatgaggcctgcg
gagctcttgtttcaaatgcatctgcttgcaaaacagtcgaaagttggtcctgatcagttg
agggttgagttatgtcagtctcctctgagatgggttcttcgcgcaatccatgtaaaccct
tcttgtatgagatattggaaggtgttgcaaagcttgtggaatgagggctga
DBGET
integrated database retrieval system
