Cucurbita maxima (winter squash): 111477183
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Entry
111477183 CDS
T05246
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog isoform X1
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111477183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cmax03009
]
111477183
Ribosome biogenesis [BR:
cmax03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
111477183
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR3_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_HPS5
Beta-prop_TEP1_2nd
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_ACSF4
WD40_Gbeta
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_1st
PQQ_2
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Aladin
Motif
Other DBs
NCBI-GeneID:
111477183
NCBI-ProteinID:
XP_022976976
UniProt:
A0A6J1IID9
LinkDB
All DBs
Position
Unknown
AA seq
821 aa
AA seq
DB search
MIEFYRNSSIEWKPSPVVALASSADGSQVAAAREDASLEIWLVSPGSVGWHCQLTINGDP
TSRVSSLVWCRAGSKDRPSGRLFSSSIDGSLSEWDLFGLTQKSVLESIGLSIWQIAAAPC
NSREVHREVKPKEIENAHVTVNESDCQDCGESEDDSNSSELHVQASDEDPSLAIACDDGC
VRIYNICDGEELIYKRSLPRVSGRVLSVTWSNDAERIFSGSSDGFIRCWNASLGHEIYRI
TAGLGGLGSGSELCVWSLLFLRCGTLVSADSTGSVQFWDSNHGTLLQAHTLHKGDVNALA
ATPNHNRVFSAGSDGQVILYKLSNENVVSSEDKYSSEMMKKWIYVGHVRAHTHDIRALTV
AVPICREAAEASQDVEVKRIRHKRKPNVFSYHKWAHLGVPILMSGGDDTKLFAYSAQEFT
KFSPHDICPAPQRVPMQLVLNTVFNQAPLLLVQAAHSLDILRVRPKCGSFGDKTCGPSKG
LAKADLLVRVKSKASRKIICSTISNSGKLFAFSDHTKPNLYELKKSGGSKCSWTVNRRKL
PNTLPFAHSMVFSFDSSRLIIAGHDKRIYVVDVSSLEVLHSFTPFREQQDDILPPAEPPI
TKIFTSSDGQWLAAVNCFGDLYVFNMEILRQHWFISRLDGASITAGGFPQWNNNVLVVTT
SSNQIYAFDIEAKQLGDWSMRHTQALPKRFQEFPGEVIGLSFPPSTTSLPVIVYSSRAMC
LIDFRMSVDQNDEYVMISGQDSTVKNLRGTTINGKLKRKLRDCQTEGRPHGRKNFENFPF
RDPVLLIGHLSKTSLLIIEKPWLEVVNTFDAPPVHRHIYGT
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgattgaattttatcggaattcttcaattgaatggaagccgtctcctgtagtagcgtta
gcctccagtgccgatggctctcaggttgcagctgcccgagaagatgcctcgcttgagatt
tggcttgtgtctcctggttccgtagggtggcactgtcagttgacgattaatggagaccct
acttctagggtttcatcactggtctggtgccgtgccggttcaaaagataggccttctggt
cgcttattttcgtccagcattgatggttctctatcggagtgggatttgtttggtttaacg
cagaagtctgttttagaatcaattggcctctccatctggcaaattgctgcagcaccctgt
aatagtcgtgaagttcacagggaggttaaacccaaggaaattgaaaatgcgcatgtaact
gtcaacgagagtgattgccaagattgcggtgagagtgaagatgattctaattcatctgaa
cttcatgtccaagctagcgatgaggatccctctctagcaattgcttgtgatgatgggtgt
gtgcggatttacaatatatgtgatggggaggagttaatttacaaaagatcgttgcctagg
gtcagtggtcgtgttttaagtgtaacatggagtaatgatgcagaacggatattttcagga
agcagtgatgggtttattcgttgctggaatgctagtctcgggcatgagatttatagaatt
actgctggacttggaggtttgggcagtggatcagaactttgtgtatggtcgttacttttt
cttaggtgtggtacccttgttagtgcagatagtactggtagtgtacagttttgggatagt
aatcatggaactcttctgcaagcacacaccttacacaagggtgatgtgaacgcacttgca
gctactcctaatcataatagagtattttctgctggctctgatggtcaggtcattctctac
aagctctctaacgagaatgttgtatctagtgaagacaagtattcttctgaaatgatgaag
aaatggatttatgttggtcatgtaagggctcatactcatgatatcagggctttgactgtt
gcagtaccgatttgtcgagaagcggcagaggcgtcccaagatgttgaggtgaaaagaatt
cgtcataagaggaagcctaatgtctttagctatcataagtgggcccatctgggagttcca
attttaatgtcaggcggtgatgatacaaagctgtttgcatactctgctcaggaatttacc
aaattttctccccatgatatatgtcctgcaccgcaaagggtacctatgcaacttgtactc
aatacagttttcaaccaagcaccattattacttgttcaggctgctcactctttggatatc
ctgcgtgttcgcccaaaatgtggttcctttggagataagacttgtggcccttctaaggga
cttgcaaaggcagatttattggttcgagttaagagcaaggcatctcgaaagattatctgc
agtactatttccaactctggaaagctgtttgcattttctgatcacaccaaacccaactta
tatgaattgaagaaatctggaggaagcaaatgttcgtggactgttaatagaaggaaactt
ccaaatacgctaccatttgcccattctatggtcttcagttttgattcttctcgattaatc
atagcagggcatgataaaaggatatatgttgtggatgtgagtagtttggaagtcttacat
agttttacgcctttccgggagcagcaggatgatatattgccacccgctgaacctcctata
acaaaaatatttacaagttcagatgggcagtggttagctgcagtcaactgctttggagat
ctatacgtattcaatatggagattttgaggcaacactggttcatttcgagactagatggt
gcctcaattacagcaggaggctttcctcaatggaacaataatgtgcttgtagtcactact
tcttccaatcagatttatgcctttgatattgaggccaagcaattaggagactggtcaatg
cggcatacacaagctctcccgaagaggtttcaagaatttcctggggaggttattggtctc
tctttcccaccatctaccacttcgttgcctgttattgtgtatagttccagggcaatgtgc
ttgattgactttagaatgtcggtggaccaaaatgatgaatatgtcatgataagtggacaa
gattcaacggtgaagaatttaaggggtactacaataaatggaaaactgaaacgaaagtta
agagactgccaaacagagggtagaccacatggtagaaagaattttgaaaattttcctttt
agagatcctgttttacttattgggcacctctccaaaacttcactcttgattatagaaaaa
ccatggttagaagtggttaacactttcgatgccccacctgtgcacagacatatatatggg
acttaa
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