Cucurbita maxima (winter squash): 111478048
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Entry
111478048 CDS
T05246
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 16-like
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
cmax
Cucurbita maxima (winter squash)
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cmax03009
]
111478048
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111478048
Ribosome biogenesis [BR:
cmax03009
]
Eukaryotic type
Pre-60S particles
Helicases
111478048
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
111478048
NCBI-ProteinID:
XP_022977893
UniProt:
A0A6J1IRF7
LinkDB
All DBs
Position
Unknown
AA seq
595 aa
AA seq
DB search
MEKLSEVVEHEEEKEDGEDDLSFEELGLDPRLVRALIKKGIQKPTPIQHVAIPLILEGKD
VVARAKTGSGKTFAYLLPLLQKLFTGSSTKKKSGPSAVVLVPTRELSQQVYKEISSLIEF
CRVQVKVVPLTSSMSHSDLRTALAGPPDIIVATPACIPKCLSAGVLQPTSINESLEILVL
DEADLLLSYGYEDDIKAFAAHVPRSCQCLLMSATSSEDVDKLKKLILHNPFILSLPEVGD
IKDDLIPKNVQQFWISCDARDKLLHILSLLKLDLVQKKVLIFTNTIDMGFRLKLFLEKFG
IKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSQTKEKEANEESNVDKRKSRKRAKQ
KIDSEFGVVRGIDFKNVYTVINFELPPSASGYIHRIGRTGRAYNTGASISLVSPDEMDIF
GEIQSFLRTDGDTDIIVPFPLLTKNAVESLRYRAEDVSKSVTKIAIRESRALDLRNEILN
SEKLKAHFDSNPRDLDLLKHDKILSKKPPAPHLRDIPDYLVDPVTQEASKIIKLARAAMG
NTQSGRRRGFKRKSRNDKDPLKTFSAEAPKRSRRGGGNREGKNDDQNRRKKKNSV
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggagaagctttccgaagtagttgaacatgaggaggaaaaggaagacggagaagatgac
ctgagtttcgaagaacttggattggaccctcgtctagttcgcgcgctaatcaagaaggga
attcaaaagccaacgcccatacaacatgttgcaattccgttaattttggaaggtaaggat
gtggtggctcgggcgaagactggttctgggaagactttcgcgtacctccttccgttgctt
cagaagctgtttactggttctagtacgaagaagaagtcaggtccaagtgcagttgttctg
gttccgactagggagctaagtcaacaggtttataaggaaatttcttctcttattgaattc
tgtcgagttcaagtgaaagttgtcccattgacaagcagcatgtcacattctgatttgcga
actgcgttggcaggacctcctgatattattgttgctacacctgcatgcatccctaaatgc
ttgtctgctggtgttctccaaccaacctccatcaatgaatcacttgaaattctcgttctg
gatgaggcggacttgctattgtcatatggctatgaagatgatataaaagcttttgcagca
catgttccacgttcctgtcaatgccttctcatgtccgctacatcaagcgaggatgttgat
aaattgaagaagctgatcctgcataatcccttcattttgtctttgcccgaagtgggagac
attaaagatgatctaattccaaaaaatgttcaacaattttggatctcttgtgatgctcga
gacaagttacttcatattctttcactcttaaagttggacttggttcagaaaaaagttctc
atattcacaaataccatagacatgggcttcaggttgaaattgtttctggagaagtttgga
atcaaatctgctgttctaaatgctgagttgcctcaaaattctcgcctccatattcttgag
gagtttaacgctgggctgtttgactatttaattgcaaccgatgacagtcaaacaaaagaa
aaagaagccaacgaggagagtaatgttgataagagaaagtccagaaaacgtgccaaacaa
aagatagattctgaatttggagtagtacgaggaattgacttcaaaaatgtttacacagtt
ataaattttgagttgcctccaagtgcatcaggatacatacaccgtatcggacgtactgga
agagcttataataccggtgcttctatctcattggtttctccagatgagatggatattttt
ggagaaatacaatctttcctgagaactgatggggatacagacattattgtaccatttcca
ttacttactaagaatgcagtagagtctttacgttatagagctgaggatgtttcgaagagt
gtgacaaaaattgctattagagaatctcgagctctggatttgaggaacgagattcttaac
tctgaaaaactgaaagctcactttgattctaatccgagggacttggatttgttgaaacat
gataagattcttagcaagaaaccccctgctcctcacctgcgtgacattcctgactatctt
gtcgacccagtaactcaagaagccagcaaaatcatcaaacttgctagagcagcaatggga
aatacacagtctggccgtcgacgtgggttcaaaagaaaatctagaaatgataaagaccct
cttaaaacattttcggctgaggctccaaagagatctcgccgtggtggcgggaatagagaa
ggcaaaaatgatgaccaaaacagacgcaagaagaaaaattctgtctga
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