Cucurbita maxima (winter squash): 111478163 Help Entry 111478163         CDS       T05246                                  Name (RefSeq) symplekin isoform X1   KO K06100   symplekin Organism cmax  Cucurbita maxima (winter squash) Pathway cmax03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:cmax00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     111478163  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:cmax03021]     111478163    03019 Messenger RNA biogenesis [BR:cmax03019]     111478163 Transcription machinery [BR:cmax03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      111478163 Messenger RNA biogenesis [BR:cmax03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      111478163     U7-dependent histone pre-mRNA processing factors      111478163 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N HEAT_EZ HEAT_2 Motif Other DBs NCBI-GeneID:  111478163 NCBI-ProteinID:  XP_022978075 UniProt:  A0A6J1IP22 LinkDB All DBs Position Unknown AA seq 1327 aa AA seqDB search MVAVMTAVDSKERLSRLINSTKIAADIPSKLARLRQLKNDLPPEDPVLLTELLPRILELQ SDRFSPIRKFVTEMIGEIGFKHIDLLPQIVPLLITVLADDTPAVVRQSITCAIDLFHICL VKIAMKGLYSSAIDNSLQSLWTWMLKFKEEIYSIAVHGNGGMSLLALKFVVEVILLYTPD PNGSSEPPATAENSVDFNISWLRGGHPILKIRDLSTEASQSLGLLLDQLRFPKVKSLNNA KIIVLINSLSTIANKRPAFYGRILPVLLGLDRSGTIFNGLHAPGVHYALKNSFLNCLKCT HPGALPWRDPLIGALREMKVGGVAEPTLHQDSTVNGSVKEEQSDGHFTKDDKATVQRIPD IMHNTLGRKRSGEPDTCDLKEDGNGSGKRARPTPKVSESEESFKEMESTVKPEQDASSSG TTSTGELDTGPAHQLVAMFGALVAQGEKAIGSLQILISSISADLLAEVVIANMRFLPPHQ PDAGDGELLQNMCISGSDAQVKYPSSFVADVLSLSSTFPPIASLLDSSRSLSDDMKPQEG GDHHAVPIVDSAGTNDDSENAITPTSLPVSKASISEAEEVCSIIPSSIHDVANLESGIPG LDSSVQSDGSSDHVVTPSLASSGFDDSNQENISTLELSSSLKLSVSREKSEELSPKAVVS DVNSLASSIATSAGLSSQLVLPKMSAPVVDLVDEEKDELLRLAFVHIVEAYKQIAVAGGL QARFSLLAYLGVEYPLELEAWKVLQNHILADYVNNEGHELTLRVLYRLFGEAEEEHDFFT STTAASVYETFLVTVAETLRDSFPPSDKSLSRLLGEAPYLPKSVITLLESMCSPGNSENA DKDLQSGDRVTQGLSAVWSLILLRPPIRDVCLKIALQSTVHLSEEVRMKAIRLVANKLYP IPSISQRIEDFSKEMLLSAISDLATDAADADGSVSESHKQDVHPEKSLIESSAVNKDISS DACPSSISQADTSLPISEAQRRMSLYFALCTKKHSLFRQIFVMYKNASKAIKQAVHDHIP ILVRTMGSSSDLLEILTDPPSGSENLVMQVLHILTDGITPSSELVFTVSKLYNSKLKDVE IMIPVLPYLPKDEVMMIFPQIVNLPGDKFQAALLRILQGSSQSGPVLNPAEVLIAIHGID PDRDGIPLKKVTDACNACFEQRQTFTQQIIAKVLNQLVEQIPLPLLFMRTVLQAIGTFPS LVDFIMEILSRLVGKQIWKYPKLWVGFLKCALLTKPQSFNVLLQLPPAQLENALNKTAAL KAPLVAHASQPNIRSTLPRAVLTVLGIALDAQNTSQVQSSQANTVDSGNSEKEVTVQDKS KESSVAS NT seq 3984 nt NT seq  +upstreamnt  +downstreamnt atggttgctgtgatgacggctgttgattcaaaggagaggctctctcgtctgattaactca accaagattgctgcagatataccttccaagcttgctcgtttgcgtcaattaaagaatgat ttgccgccggaagatcctgttttacttactgagctcctccctcgtatccttgagctacag tctgaccgcttcagccccatccgcaagtttgtcacagagatgattggtgaaattggattc aagcacatcgacttgttgcctcaaattgtaccattattgataacagttttggctgatgat actccagctgttgttcggcaatccattacttgtgccattgatttatttcacatttgtctt gtaaaaattgcgatgaagggtctgtattctagcgcgatagacaattcacttcaatcattg tggacatggatgttaaagttcaaggaagagatatattcaatagccgttcatggaaatggt ggaatgagtttgctagctctcaagtttgtcgtagaagtaattttactttacacacctgac cccaatggctcttcagagcctcctgctactgcagaaaattctgtcgattttaatatatcg tggcttcgtggaggtcatcctatactcaaaattagagacttatcaactgaagccagtcaa agtttgggtttgttgctcgatcagctcagattcccaaaagtgaaatctctcaataatgca aagattattgtgctcattaatagtctttcaacaattgcaaacaagaggcctgctttttat ggccgaattttgcctgtcttgcttggtctggaccgctcaggcactatcttcaatgggttg catgctcctggtgtacattatgccttaaagaattcatttctcaactgcttgaagtgtacc catccaggtgctttaccgtggcgggatcctctaattggtgccctgagagagatgaaagtc gggggagtggctgagccaacccttcatcaagattcaacagttaatggatctgtaaaggag gagcagagcgatggccattttaccaaggatgataaggctactgttcaaagaattcctgat attatgcataatactttggggaggaagaggtctggtgaaccagacacctgtgatttgaaa gaggatggaaatggatctggaaaacgtgccagaccaacacctaaggtctcggagtctgag gaatcatttaaagaaatggagagtactgttaagcctgaacaagatgcatcatcaagtgga acaacttcaacaggagaattggataccggaccagcacaccaacttgtagccatgtttggt gccttagttgctcaaggagaaaaagctattgggtccttacagatccttatctctagtatt tctgctgacttgcttgctgaggttgtcattgctaatatgcgtttccttcctcctcatcag cctgatgcaggagatggagaacttctgcagaatatgtgtataagtggtagtgatgctcaa gtcaaatatccgtcatcatttgtagctgatgttctttcattatctagcacctttccaccg attgcatcattgttggattcttctaggtcattatctgatgacatgaagcctcaagaggga ggagaccatcatgcagttcctattgttgacagtgctgggacaaatgatgattctgaaaat gctataacgcccactagtttacctgtctccaaagcatctatatctgaagcggaagaagtt tgttcaatcattccatctagtatacatgatgtggccaatttagagagtgggatacctggg cttgattcttctgttcaaagtgatgggtcatcagatcatgttgttactccctcgcttgca tcatctggttttgatgattctaatcaagagaacatttcaactttggaactaagttcctcc ttgaaattatcagtttctagagaaaaatcagaggagcttagtccaaaggcagttgtttca gatgtcaacagcttggcctcttcaattgcaacttctgcggggttgtcttctcagttggtc ttgcccaagatgtcagcacctgttgttgaccttgtagatgaagagaaggatgaattacta agactggcatttgtgcacattgttgaggcgtataagcaaatagcagtcgctggaggtttg caagcccgcttttctctattggcatatttaggagtggagtatcccttggaattagaggca tggaaagtgttgcaaaaccatatattggctgattatgtaaacaatgagggacacgagttg actttgcgggttctgtataggttatttggagaggcagaagaggaacacgatttctttaca tctacgactgctgcttcagtatatgagacatttctggtcactgtggcagaaacacttaga gattcttttcctccatcggacaagtcattgagtagattgcttggtgaagctccttatcta ccaaagtcagtcataaccctgttggaaagcatgtgctctcctggaaacagtgaaaatgca gataaggatctccaaagtggtgatcgtgtaactcaaggtcttagtgcagtgtggagttta attttattgagaccccctatccgtgatgtctgcttgaaaattgccttacagagcactgtg catctctctgaggaagtgaggatgaaggcaattcgtctggttgctaacaagctttatcct ataccatccatttctcaacgaatagaagatttttctaaggagatgctgctttctgccatt agtgaccttgcaacagatgcggcagatgctgatggatcagtatcagaatcacacaagcag gatgttcatccagaaaaatctttaattgaatctagtgccgtcaataaagatatatcctct gatgcttgtccttcatccatttcacaagctgacacatctcttccaatctctgaagcccag cgtcggatgtccttgtactttgcactttgcacaaagaagcactcactttttcgccaaatt tttgtcatgtataaaaatgcctcaaaagcaattaagcaggctgttcatgaccatattcca atacttgtccgcacaatgggctcatcctcagatcttcttgaaattcttactgatcctcca agcggaagtgagaatcttgtaatgcaggttttgcatattctgacagatgggattactcct tcgtctgagttagtttttaccgtaagcaagttatacaattcaaaactaaaggatgtggag attatgatccctgtattaccatatctaccaaaagatgaggtcatgatgattttcccccag attgtgaatcttccaggtgacaaattccaagcagcacttctgcggatattgcagggatca tctcagtctgggccagttctaaatccagctgaagttctaattgctattcatggaattgat cctgatagagatggaattcctctcaagaaggtcacagatgcatgcaatgcttgctttgag cagcgtcaaactttcacacagcaaatcattgcaaaagttttgaatcaattggttgagcag attcctcttccattattgttcatgcgcacagtattgcaagccatcggcacttttccatca ctggtagattttataatggagattctatctcgtctcgttggcaagcagatatggaaatac cccaagttatgggtaggcttcttgaagtgtgcactcttgacaaagcctcaatcctttaat gtgctgcttcagctaccaccagcacagctcgaaaatgcattaaacaaaactgcagcacta aaggcacctttggttgctcatgctagccaaccgaacatccgatcgacactcccaagggct gtattgactgttctagggattgccttggatgctcaaaatacaagccaggtgcaatcgagt caggctaacacggtcgattcaggtaactcggagaaggaggttacagtccaagacaaatct aaagaatcatctgtagccagttga

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