Cucurbita maxima (winter squash): 111478551
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Entry
111478551 CDS
T05246
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03020
RNA polymerase
cmax03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111478551
09124 Replication and repair
03420 Nucleotide excision repair
111478551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmax03021
]
111478551
03400 DNA repair and recombination proteins [BR:
cmax03400
]
111478551
Enzymes [BR:
cmax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111478551
Transcription machinery [BR:
cmax03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111478551
DNA repair and recombination proteins [BR:
cmax03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111478551
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
111478551
NCBI-ProteinID:
XP_022978631
UniProt:
A0A6J1INB9
LinkDB
All DBs
Position
Unknown
AA seq
1200 aa
AA seq
DB search
MDEYEEYDRNMNDDDDDIDQTMHDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQ
NTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFP
KAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN
SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMA
ESQNRPPSTMFVRMLSQTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH
ICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEM
LPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML
FRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ
VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL
MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR
RLRRRVDVNTEVGVVRDVRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESP
EDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARVNPVEAYSDTYTHCEIHPSLIL
GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM
EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL
VKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAAR
YSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG
MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT
VDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPV
QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAI
ANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEVKPLKDQKKKGS
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggacgagtacgaagagtatgatcggaatatgaatgacgacgacgacgatattgaccag
actatgcacgacgatgaagaagagatcacgcaggaagatgcttgggcagtaatttcagcc
tattttgaagagaaggggttggtccggcagcagctcgattccttcgatgagtttattcag
aatactatgcaagaaatcgtggacgagtctgctgacatcgagattcgtcccgagtcgcag
cacaatcccgggcaccagtctgatgttgctgagacaatatacaagatcagctttggtcag
atatacttgagtaagcctatgatgaccgaatctgatggagagactgcaacattatttcct
aaggctgcacgattgaggaatctaacgtactcggcgcctttatatgtggatgtatcaaaa
agagtcataaagaaaggtcatgatggtgaagaagtcactgaaacccaagattttacaaaa
gtttttattgggaaggttcccatcatgctccggtcgagttattgcacgttgtatcagaat
tctgagaaggatctgactgagctcggggagtgtccatatgaccaaggaggatattttatc
atcaatgggagtgagaaagttcttattgcacaagagaagatgagcacaaatcatgtgtat
gttttcaaaaaaagacagcctaacaagtatgccttcgtggcagaagtccggtctatggct
gagtcacaaaatagaccacctagtaccatgttcgtacggatgctttctcaaactagtgcc
aaggggggctcttcaggacaatacatacgtgccactctgccttacattcgaactgagatt
cctattattattgtgtttcgtgctctaggatttgttgctgacaaagatattctagagcat
atatgttatgacttctctgatactcaaatgatggagttgcttcggccttccctggaagag
gcttttgttatccaaaatcagcaggttgcacttgactacatcgggaagagaggatcaaca
gttggtgtgactaaggaaaagaggattaagtatgccaaagagatccttcaaaaagaaatg
cttcctcatgtgggcgtaggtgaattttgtgagactaagaaggcatactattttgggtat
ataattcaccggctactcttatgtgctcttggccggagagcagaagatgatagggatcat
tatgggaacaaaagactggaccttgctggtcctttacttggaggcttgtttagaatgctc
tttagaaagttaacaagagatgtgagaggttacgtacaaaagtgtgttgataatggaaag
gatgttaatttgcaatttgccatcaaagcaaaaactattactagtggcctgaaatattcg
ctagccactggaaactgggggcaggcaaatgcagctggtacaagagctggagtatcacag
gtgttaaatcgtttgacatatgcttctaccttgtctcacttacgaaggctgaattcaccc
attggacgagaaggtaaactggccaagcctcggcagttgcataattcacaatggggaatg
atgtgtcctgctgaaacacctgaaggacaagcttgtggactggtaaagaatcttgcattg
atggtttatataacagttggatctgcggcatatcctattttggaatttttggaagaatgg
ggcacagaaaattttgaggaaatttctcctgctgtcattcctcaagcgacaaaaatcttt
gtcaatggttgttgggttgggatccatcgggatcctgaaatgttggtgaagactttaagg
cggctgaggcgacgagttgatgtaaatactgaagttggagtagttagagatgtccgcttg
aaagaactacggatatatactgattatggccgttgcagtcgtccattattcattgttgag
aaacaaaggcttctcataaagaagaaggatatccatgctcttcagcaaagggaatcccct
gaagacggtggttggcatgatcttgtagcaaagggattcattgaatacatagacacggag
gaagaggaaaccaccatgatttccatgacaattagtgatcttatacaagcaagggtcaac
ccggttgaggcttattctgacacctatactcattgtgaaatccatccatcattgattttg
ggcgtttgtgcttcaattattccatttcccgaccataaccagtccccacgtaacacgtat
caatctgctatgggtaagcaagctatgggaatctatgtcaccaactaccaattccgaatg
gatactttggcctatgttttgtattatccacaaaagcctcttgttactacacgagccatg
gagcatctccatttcaggcagcttccagctggcattaatgccattgttgccatcgcttgc
tactctggttataaccaggaagattctgtgatcatgaatcaatcctctattgaccgtgga
ttttttaggtcacttttcttccggtcttacagggatgaggagaaaaagatgggaactctt
gtaaaagaagattttggacggcctgacaggactaatactatgggtatgaggcatggctcc
tatgataaattagatgacgatggtcttgcaccacctggtactcgagtatctggtgaggac
gttattattggaaagactactcccatttctcaggaagaagctcagggacaagctgcacgt
tactcaagacgtgatcatagcattagtttacgtcatagtgaaaatgggattgtagatcaa
gttctactgactacaaatgctgatggattgaggtttgtaaaagtaagggtgagatctgtt
cgaatacctcagattggggataagttcagcagtcgacatggacaaaaagggacagtggga
atgacttacacacaagaagacatgccttggactgtggaaggaatcacccccgatattatc
gtgaatccacatgctattccttctcggatgacaattggtcagcttattgagtgtatcatg
gggaaggtggcagcccacatgggaaaagaaggagatgctaccccatttactgatgtcact
gtggataacatcagtaaggctctgcacaagtgtggttatcagatgcgtggatttgaaacc
atgtataatggccatacaggccggcggctctcagcaatgatattccttggtcctacctac
taccaaaggttgaagcatatggttgatgacaaaatacattcacgtggaaggggtcctgtg
cagatccttacgagacaacctgctgagggtcggtcacgtgatggtggtctccgatttggg
gagatggagcgtgactgcatgattgcccatggtgctgctcactttcttaaggagaggttg
ttcgatcaaagtgatgcatataggatccatgtctgtgagtgctgcggattgatagccatt
gcaaatctcaagaagagttccttcgaatgtaggggatgtaaaaacaaaacggacatcgtt
caggtttatatcccttatgcctgtaagcttctcttccaagagcttatggctatggcaata
gcgccacggatgttcacaaaggaggttaaaccattgaaagaccaaaagaagaaaggatcc
tga
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integrated database retrieval system
