Cucurbita maxima (winter squash): 111478616
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Entry
111478616 CDS
T05246
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111478616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111478616
03012 Translation factors [BR:
cmax03012
]
111478616
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111478616
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111478616
Translation factors [BR:
cmax03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111478616
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
HA2_N
nSTAND3
ATPase
AAA_19
Ank_2
AAA_22
Ank_5
ABC_tran
AAA_23
Rad17
AAA_7
AAA_16
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
111478616
NCBI-ProteinID:
XP_022978754
UniProt:
A0A6J1INX6
LinkDB
All DBs
Position
Unknown
AA seq
1286 aa
AA seq
DB search
MAKKKQKKGEQKPKPKAFADADSEIIQALERFCLSNDEVFTFEADLSKRERALVHEECRK
MGLTSKSYGRGDQRRVSIYKSKPQKDTMKFSEKTKSVLDDLFSSYPPDDGELGKETIGKC
KKKAHKQSRRKDDIFWRPSMNKEEIMKKVESYTTRVKSIANMKKISGDRSKLPIASFQDV
ITSTVESHQVVLISGETGCGKTTQVPQFLLDYMWGKGEACKIICTQPRRISATSVSERIS
YERGENVGSDVGYKIRLESKGGRHSSIVLCTNGILLRVLISEGLGKLTMDASEKSRKNVV
SDLTHIIVDEVHERDRFSDFILAILRDLLPTYPHLRLILMSATIDAERFSKYFGGCPIIS
VPGFTFPVKNLYLEDVLSIVKSSEENHLDDSTVGASDEETELTEEDKLSLDEAIHLAWLN
EEFDPLLELVASEGSSQIYNYQHSLTGLSPLMVLAGKGRVSDVCMLLSFGAMCELQAKDG
MTALEMAERGEHKETAEAIRKHLESSMSNSKEEQRLIGKYLAKNSNSVDVALIDLLLGKI
CLDSKEGAILVFLPGWDDISKTRERLSINPIFKDASKFLIISLHSMVPSKEQKKVFKRPP
SGCRKIILSTNIAETAITIDDVVYVIDSGWMKEKSYDPYRNVSTFQSSWISKASAKQREG
RAGRCQPGICYHLYSKVRASSLPDFQVPEIKRMPIEELCLQVKLLDPNCRIEDFLQKTLD
PPVFDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALT
LACASDYKDPFTLPMLPSERKKAAAAKAELASLYGGHSDQLAVVAAFNCWKNAKRRGQEA
RFCSNYHISPSTMSMLFGMRRQLEMELVQNGFIPEDISTCSLNARDPGILHAVLVAGLYP
MVGRLLPPQKKGKRAVVETGSGGRVLLHRQSLNFELSHKLTDNCPLIVYDEITRGDGGTH
IRNCTVVGPLPLLMVAKEIAVAPAKENDNGKGDIVNDTDGNDEAGVVETVEDKMDIENRS
NEQPEEMIMSSPDNSVTVVVDRWLYFWSKALDIAQLYCLRERLSAAILFKVKHPNKVLPP
VLGASMHALACILSYDGLTGISLESVEMLTTMVDATEISNFVPGRSNETHKKVSSFHRSL
SNYNDFTVPESSGTSNLNHPFSQNFLPPADFRAANPSDPSSPNFRAFPNSVYARSTLQPH
REQEHPQPAKPFQDQNATQQQHAPEHKTRKQRKSRRERKAAQQQKHPQLQKPPSGDPSLN
GYGLSTYGPYGLRGISLKRPRGNGAG
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaagaagcagaagaagggggagcaaaagccgaaacccaaggcatttgcagac
gcggacagtgaaattattcaggcactcgagcggttttgcttgtccaatgatgaagttttc
acttttgaagctgatctttctaagcgtgaacgtgctctcgtgcatgaagaatgcaggaaa
atgggtttgacatcaaagagttatggacgtggtgatcaacggcgtgtttctatatataaa
tccaaaccgcaaaaggacaccatgaaattttctgaaaaaaccaaaagtgttttggacgat
ttatttagttcatacccacccgatgatggagagttgggcaaggaaacaattgggaaatgc
aagaaaaaggcccataaacaaagtcgaaggaaagatgatattttctggaggccatcaatg
aacaaggaagagataatgaagaaggtggaatcatatacaactagagtgaagagtattgca
aatatgaaaaagatatcaggagatagatccaagcttccaattgcatcctttcaagatgtc
attacttcaacagttgaatcgcaccaggtcgttctcatatctggcgaaactgggtgtgga
aagacaacgcaggttcctcagtttcttttggattatatgtggggtaagggagaggcatgt
aagataatctgtactcaacctcgacgaatatctgcgacatcagtttctgagcggatctcc
tatgaaaggggagaaaatgttggaagtgatgttggatacaagatacggttggaaagtaaa
ggtggcaggcactcatcaattgtactctgcacaaatggtattctgttaagggtgctgatt
tctgaagggttgggaaaattaactatggatgcttcagaaaaaagtaggaaaaatgttgtg
tctgacttaactcacattattgtggatgaagttcatgaaagggatcgcttctctgatttc
attctagcaattttgagagacttgcttcctacatatcctcatcttcggctgatactaatg
agtgctaccattgatgctgaacggttttcaaaatattttggtggctgtccaatcatcagt
gttcctggattcacgtttcctgtaaaaaatttgtatcttgaggatgtactgtctatagtg
aaatcttcggaagagaaccaccttgatgatagtacggtgggggcttcagatgaagaaact
gagctaacagaagaagacaagctttctttggacgaagcaattcacttggcttggttgaat
gaagaatttgatccccttctagaattggttgcttctgagggatcctctcaaatttataat
tatcagcattccttgacgggcttatcacctctaatggtgcttgctggaaagggtagagtt
tccgatgtttgcatgctgctatcttttggtgcgatgtgtgaattacaggccaaggatggc
atgactgcgttggaaatggctgagcgaggagaacataaagaaactgctgaagcaatcaga
aaacatttggaaagttccatgtccaactccaaggaagaacagcgattgattggtaaatat
cttgcaaaaaattctaattctgttgatgttgctcttatagacctgctgttagggaaaata
tgtcttgattcaaaagaaggagctattcttgttttccttcctggatgggatgatatcagc
aagactcgggaaagactttcaatcaaccctatcttcaaggatgcatcaaaatttttaata
atatctcttcattcaatggttccttctaaagagcaaaagaaggttttcaaacgaccacct
tccggttgccgcaaaattattctgtccactaatattgctgaaacagccattaccattgat
gatgtggtttatgtgatagacagtggatggatgaaagaaaaaagttatgatccttacagg
aatgtttctacttttcaatcatcttggatatcaaaggctagtgccaagcagcgtgaggga
cgagcaggtcgctgccagcctgggatatgctatcatctctattcaaaagttcgtgcatct
tctcttcctgattttcaagttcctgaaattaagagaatgccaatagaggaactttgtttg
caggtgaaattgcttgatccaaattgtaggatagaggatttcttgcagaagactttggac
cctccagtttttgatactatccgtaatgcaatattagtccttcaggatattggggctttg
tcactcgatgagaaactgactgagcttggggagaaattaggttctttgcctgttcatcca
gtaacaagcaagatgcttattttcgctatattgatgaactgcctcgatcctgctctaact
ctggcatgtgcttctgactacaaggaccctttcactcttcccatgttaccaagcgaaaga
aaaaaagctgctgcggctaaagcagagcttgcttctttgtatggtgggcatagtgatcaa
ctggctgtggtagctgcatttaattgctggaaaaatgccaaaagaaggggtcaagaggcc
cgtttctgttctaattaccatatctctccgagcactatgtctatgctttttggcatgcgg
agacaactcgaaatggaactagttcaaaatggttttatacctgaggatatttcaacttgc
agcttgaatgctcgtgaccctggcatactccacgctgtccttgtggctggtttatatcca
atggtgggaagattacttccacctcagaaaaagggaaaacgagctgttgtggaaactggt
tcggggggtagagttcttttgcaccgacagtcccttaactttgaactgtcacacaagcta
acagataattgccctctgattgtttatgatgagataacccgtggggatggtggtacacat
ataagaaactgtactgttgtcgggcctctcccattattaatggttgcaaaggagattgct
gttgcccctgcaaaggagaatgataatggtaaaggtgatattgtcaatgacaccgatggc
aacgatgaagctggtgtagttgaaactgttgaagataaaatggatatagaaaatagatca
aatgaacaaccagaagagatgattatgtcctcccctgataactcagtaactgtggttgtt
gaccgttggttatacttttggtcaaaggcacttgatattgctcagttatactgcttgaga
gagcgattatctgcagcaatcttattcaaagtaaagcatccaaacaaagttcttcctccc
gttcttggggcctctatgcatgccttagcttgcattctatcttatgatgggttaactggt
atatcattagaatcagtagaaatgttgacgacgatggtagatgcgactgagattagcaat
tttgtacctgggaggtccaatgaaacacacaagaaagtaagttcgtttcatagatcactt
tcaaattataatgattttactgttccggaatcaagtggaacatcaaatttaaaccatccg
ttcagtcagaattttttaccaccggctgattttagagcagcaaacccaagtgacccatca
agccctaattttagggctttccctaattcagtctatgcaaggtcaacactgcagccacat
agagagcaggagcatccccagccggcaaaaccttttcaagaccaaaatgctacccagcag
cagcatgctccagagcacaaaacacgtaaacagagaaagtcccgcagggagcgcaaggca
gctcaacaacagaaacatccccaactacagaagcctccatcaggagaccccagtttaaat
gggtatggattaagcacgtatggaccatatggactccggggcatttctttaaagcgacca
cgtggtaatggggcgggataa
DBGET
integrated database retrieval system
