Cucurbita maxima (winter squash): 111479026
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Entry
111479026 CDS
T05246
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03013
Nucleocytoplasmic transport
cmax03015
mRNA surveillance pathway
cmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111479026
09122 Translation
03013 Nucleocytoplasmic transport
111479026
03015 mRNA surveillance pathway
111479026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111479026
03041 Spliceosome [BR:
cmax03041
]
111479026
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111479026
Spliceosome [BR:
cmax03041
]
Complex C
Other components
EJC/TREX
111479026
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSB_motif
SAP
SAP_new25
Motif
Other DBs
NCBI-GeneID:
111479026
NCBI-ProteinID:
XP_022979241
UniProt:
A0A6J1ISQ5
LinkDB
All DBs
Position
Unknown
AA seq
726 aa
AA seq
DB search
MSSKSKYPILENRPIDQWRVTELKDELKRRKLPIRGLKEDLIKRLDESLRIERENAEETN
GVDDAPPVTDSDNNQEHASIVSETTKETSEDATMIEKVDGDEVQVEKNGSTAAVDEGILQ
DGVSLNGSPRVEEGSAVHVTTLETNVTVAETVATEGALSVEGLQNMETKDNEDSKPQSEV
EESKSQLDSKDSKLQMEIEDTQPQLVDVNMEAQVKNKNLKSQDANLGHDSSDPDNQVSEV
SPVIGSQVRTDSISTDSVTINEMIELKENISADHVKLELDVKQEMVEPSSSIVVPDAGES
HPMDVEEPPVNKNVEESPANRDVLEAPVNKDVVDSFVKDVVQPFVKEDVEEKHDIKDMIT
DLHEKHDDVDVGLSEKLNLDRSSGDDSIEDAMEIKTDSGNNPEEMGEKNVKIEGPISKEE
KFADIAVRGSTADKKNLDIESDVSSLPAEKRKMLDQVGAGNTESVKRHRRWNAENLKIPE
PQNAVHTSTSNSKDILQSPAPKRNFSRSDSTASEDPSKERVVLPSPKPPTNSLRIDRFLR
PFTLKAVQELLSKTGSITSFWMDHIKTHCYVTYSSVEEAMKTRDAVYNLQWPPNGGRLLI
AEFVDPQEVKIRVGAPQTPTPATVAPPVSTMPPPKQPEPSPRLPRQQHAPPPSLPPPPPT
NNLPQVREQLPLPPPPALPDKVDTPIVTLDDLFRKTKATPRIYYLPLSDEQVQGKLAAGR
GKDIKQ
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaaatcgaaatatccaattctcgaaaatcgaccgattgatcagtggagggta
acggagttgaaagacgagcttaagagacggaaattgcccatcagaggtctgaaggaagat
ttgatcaaacggttggatgaatcacttcgaattgaaagggaaaatgccgaggaaaccaat
ggtgttgatgatgcccctccagttacagatagtgacaataaccaagagcatgcatctatt
gtttctgaaacaacgaaagaaacaagtgaagatgctaccatgattgagaaggtggatggt
gatgaagttcaggttgagaagaatggcagtactgcagctgtggacgaagggatacttcaa
gatggggttagcctcaatggttcacctagggtggaagaggggtcggctgtccatgttact
actctggaaactaatgttaccgtagctgaaactgtggcaactgaaggagcgttaagtgtt
gaaggcttgcaaaacatggaaaccaaggataacgaggattcaaagccccagtcggaggtt
gaggaatccaagtcccagctggatagtaaggattcaaagcttcagatggaaattgaagat
acacagccccagcttgttgatgtgaatatggaggcccaggtgaagaataagaatttgaag
tctcaagatgcaaatctcgggcacgactcttctgatccagacaaccaggtatctgaggtc
agccctgttatagggtctcaagtaagaactgattctatttctactgattctgtgacaatt
aatgaaatgattgaactaaaggaaaatatatctgctgaccatgtaaaattagaactagat
gttaagcaggagatggtggaaccatcatccagcattgttgtcccagatgctggcgaatca
catccaatggatgttgaagagccacctgtgaacaagaatgttgaagagtcacctgcaaac
agagatgttctggaggcacctgtgaacaaagatgttgtagattcttttgtgaaagatgtt
gtacagccctttgtgaaagaagatgttgaggagaaacatgatattaaggacatgattact
gatcttcatgaaaaacatgatgatgtagatgtggggttatctgaaaagctaaatttagat
agaagttctggggatgattcaatagaagatgctatggagattaaaaccgattcagggaat
aatcctgaagaaatgggagagaagaatgtaaaaattgagggccctatatcaaaagaggaa
aagtttgcagacattgcagtgcgaggctcaactgcagacaagaagaatcttgatatagag
agtgacgtttcatctttgcctgctgaaaaaagaaagatgcttgatcaagttggggctgga
aatactgagtccgtaaagagacatcgtaggtggaatgctgaaaacctcaaaattccagag
ccccaaaatgctgttcatacatcgactagtaattcaaaggacattcttcaatcacctgct
ccaaaacgcaacttttccagatctgactccacagctagtgaagatccatcgaaggaacgt
gttgttctaccatcaccaaaacctcccacaaattcactaagaatcgatcgttttctgcgt
ccatttaccctcaaagctgtgcaagaacttctgagtaagactggtagtatcaccagtttc
tggatggatcacattaagacgcattgctatgtaacttactcatcggtggaagaagccatg
aagaccagagatgctgtttacaatctgcaatggccaccaaatggtgggcgccttcttata
gctgagtttgttgatcctcaagaagtaaaaattcgagtgggagctccacagacccctaca
cctgcaacagttgctccaccggtctctaccatgcctccacccaagcaacctgagccttct
cctcgtctaccaaggcagcaacatgctccaccaccttctcttccaccacccccacccaca
aacaaccttcctcaagtaagggagcagcttccactcccacccccgcctgctcttcctgat
aaagttgacactcctattgtcaccttggatgacctcttcaggaaaaccaaagcaactcct
cgcatctactatttacctttatccgatgaacaggtgcagggaaaacttgcagcaggaagg
ggaaaggacattaaacagtaa
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