Cucurbita maxima (winter squash): 111479219
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Entry
111479219 CDS
T05246
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03015
mRNA surveillance pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111479219
09123 Folding, sorting and degradation
03018 RNA degradation
111479219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111479219
03041 Spliceosome [BR:
cmax03041
]
111479219
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111479219
mRNA cycle factors
Stress granule specific factors
111479219
Spliceosome [BR:
cmax03041
]
Complex C
Other components
Complex C specific factors
111479219
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_3
RRM_Nup35
RRM_7
DUF4523
RRM_MARF1
PABC_AtC3H46
PH_35
Motif
Other DBs
NCBI-GeneID:
111479219
NCBI-ProteinID:
XP_022979541
UniProt:
A0A6J1IR25
LinkDB
All DBs
Position
Unknown
AA seq
656 aa
AA seq
DB search
MAAQVQAQPQNSISGINPAGNGGANFVTTSLYVGDLDQNVTDSQLYDIFNQLGQVVSVRV
CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFSPLNGKPIRVMYSHRDPSIRKSGAGNIF
IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM
LLNDKQVYVGPFLRKQERDSSVGKSKFNNVFVKNLSETTTEEDLNKVFSEFGTITSIVVM
RDADGKSKCFGFVNFENTDDAARAVDALNGNIFDDKEWYVGRAQKKSEREVELKNRFEQT
MKEAADKFQGANLYIKNLDDSISDDKLKEVFAPFGTITSCKVMRDPNGVSRGSGFVAFST
PEEASRALMEMNGKIVVSKPLYVALAQRKEDRRARLQAQFSQIRPVPMAASVAPRMPIYP
PGGPGIGQQMFYGQGPPTMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGPRP
GGRRAGAVQQTQQPVSMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGM
PLRDASLSSQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMD
QTEVLHLLESPEALKAKVAEAMEVLRNVAAATQQQQAGNAAADQLASLSLTENLVS
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcaggtgcaagctcagcctcaaaattccatttccggcatcaatccggcggga
aatggtggtgcaaattttgtgactacttctttgtatgtcggagatctggaccagaatgtc
acggattcgcagctttatgatatatttaatcagttgggtcaggtggtttcggttcgggtt
tgccgggacttgacgacccggcgatctctcggctatggttatgtcaactacagcaaccca
caagatgctgcaagagcattggatgtgctgaacttttccccactaaatggaaaacctatt
agagttatgtattctcaccgtgacccaagcattcgcaaaagtggggctggaaatatattt
atcaagaatttagacaaagcaattgaccataaagctctacatgatacattttcggcattt
ggtagtatcctttcttgcaaagtggctttagattcctctggccagtcaaaaggctatggt
tttgtgcaatttgacaatgaggagtctgctctgaaagctattgagaagttgaacggtatg
ctgttgaatgataaacaagtttatgtaggaccctttcttcgtaaacaagaaagagatagt
tctgttggcaaatccaaatttaacaatgtgtttgtcaagaatctttctgagacaactacg
gaagaagatttgaacaaggttttttctgaatttgggacaatcaccagtatcgttgtgatg
agggatgctgatggcaaatcaaaatgctttggatttgtgaattttgaaaacactgacgat
gctgctagggcagttgatgccctcaatggaaatatatttgatgataaggagtggtatgtt
gggagagcacagaaaaaatctgaaagagaagtagaattgaagaaccggtttgaacaaacc
atgaaagaggcagctgacaagttccagggggcaaacttgtacattaaaaatttagatgat
agcattagtgatgataagcttaaggaggtttttgctccgtttggcactatcacctcgtgc
aaggtcatgcgtgaccccaatggtgtgagcagaggttctggatttgttgcattttcaacc
cctgaagaggcatctagagctcttatggagatgaatggcaaaatagttgttagcaaacca
ttgtatgtagcacttgcacagaggaaagaagatagaagggccagattgcaggctcagttc
tctcaaatacgaccggttcccatggctgcttcagttgcccctcggatgccaatctatccc
cctggtggtccaggtatcggacagcaaatgttttatggtcaaggtcctcctacaatgatt
ccttcccaaggtggctttggttatcagcagcagcttgttcctggtataaggcccggtgga
ggtccaatgccaaatttctttgtcccaatggttcaacagggtcagcaagggccgcgtcct
ggtggcagacgtgcaggagctgtccagcaaacccagcagcctgtttcaatgatgcaacaa
cagatgttgcctagaggaggacgtgtctatcgctatcccccaggaagaggtctgcctgat
gttcctatgcctggtgttgctggaggcatgttttctgttccatatgacatgggtggtatg
ccgttgcgtgatgcatccctctcctctcaacctgtccctgtaggtgctctggcatctgct
ttggcaaatgctactccagaccaacagagaacaatgctgggggagaatctttacccgcta
gtggaacaattggagccagacaacgcagccaaggtaactggaatgcttctggagatggac
cagactgaggtcttgcatttactcgagtccccggaggctttgaaggcaaaagtagctgag
gctatggaggttttgaggaatgtagctgctgcaacacagcagcagcaagcaggcaatgca
gcagctgatcagctagcctctctgtcgctcactgagaacctcgtgtcgtga
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integrated database retrieval system
