Cucurbita maxima (winter squash): 111479539
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Entry
111479539 CDS
T05246
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X1
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
cmax
Cucurbita maxima (winter squash)
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cmax01009
]
111479539
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmax03021
]
111479539
Enzymes [BR:
cmax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
111479539
Protein phosphatases and associated proteins [BR:
cmax01009
]
HAD phosphatases
Fcp/Scp phosphatases
111479539
Transcription machinery [BR:
cmax03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
111479539
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
111479539
NCBI-ProteinID:
XP_022980004
UniProt:
A0A6J1IY57
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MAKNQTILIKDTVYKLQLALLDGIHNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC
QSNLPSDNTRKGRYRISLKEHKVYDLEETYKYCSSTCLINSRAFSGRLQDERCSVMNPGK
LKEILRLFENLSLDSKENTRNSCDLGLEIQEKIESSIGEVPIEEWMGPSNAIEGYVPHRN
HNIMTLPSKDGKELKDGSKAKIKQLGVEKDFFSDFSFASTVITDEEYSVSKISSGLKEMT
FDTKSKAQTGEFCGKQSNEQFTILETPHGPAPTKNSVGRKARGTKERTNVSATAESNNNL
SDSPSTSNHCNTNCNITTEEPKGGSNELNETQIKSSLKQPGKKNLRRSVTWADAKTDETS
IINLPEDREMGKTKECSRMTSNLVNADNGNEDMLRVESAEACAMALSQAAEAITSGQNEV
SDAVSEAGIIILPRPSDANEEVSTNGKNISEPYSSSEKSNKPGILHSDLFDPEDSWYDSP
PEGFSLTLSSFATMWMAIFAWMTSSSLAYIYGKDEKFHEEFQYIDGREYPRKIVSADGRS
SEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGCLLDTMTFLDALPAFRMKQWQVIV
LLFIEALSVCRIPSLDSQVSNSRSLFHKVLDRAQIRSNEYETLKDHILPLGRTAQFSGEN
DA
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaatcagactattttgatcaaagacacagtctataaattgcagcttgcactc
cttgacggaattcataatgagaaccagctatttgcagctgggtctctgatgtctcgcagt
gactatgaagacgtggtgactgagcggtctattgcaaacctctgtggatatccattatgc
caatctaatttgccatctgataacactaggaaaggccggtacagaatttccttaaaagag
cataaggtgtatgatttagaagagacatataagtactgctcttccacttgtctcattaac
agtcgtgccttttctgggagattgcaagatgagagatgttcggttatgaatcccgggaaa
cttaaagaaattcttagattgtttgagaatttgagtttggattctaaggaaaatacgagg
aacagttgtgatttggggcttgaaattcaggagaagatagaaagcagtataggagaagtt
cccattgaagagtggatgggtccatcaaatgcaattgaaggctatgttccacacagaaat
cataacatcatgactttgcctagcaaggatggaaaagaactcaaggatggttctaaagct
aaaattaagcaattgggtgttgaaaaggatttcttcagtgacttctctttcgcaagtact
gtaatcacagatgaagagtatagtgtttcgaagatatcatctggtttgaaagagatgact
tttgatacaaagtcaaaagcacaaacaggagagttctgtggtaaacaatcaaatgaacag
tttaccattttggaaaccccgcatggtccagctcccacaaaaaacagtgttggacggaag
gcaagaggaacaaaagaaaggactaatgtatcagccaccgcagaaagtaataataatttg
tctgattctccctcaacttcaaatcactgcaatactaattgcaatataacgactgaagag
cccaaaggtggatctaatgagcttaacgaaactcagatcaagtcctcccttaaacaacca
ggcaagaaaaacctgcgccgctctgtaacctgggcagatgcaaaaacagatgagaccagt
attataaaccttccagaggacagagaaatggggaagacaaaggaatgttccagaatgaca
agcaatttggtaaatgctgacaatggtaatgaggacatgttacgcgttgaatctgctgaa
gcctgtgcaatggcactgagccaagcagctgaagcaattacttctgggcaaaatgaggtc
tctgatgcagtgtctgaagctggaattattatattgccacgtccaagtgatgctaatgaa
gaagtatctacaaatggcaagaacatatctgaaccatattcatcctcagagaagtcaaac
aaacctgggatattacattctgatctgtttgatcccgaagactcttggtatgattcgcct
ccagagggtttcagcctaactttatcttcttttgcaaccatgtggatggcaatctttgca
tggatgacatcatcttccctggcctacatttatggaaaagatgaaaagttccacgaggaa
tttcaatatattgatgggagggagtatccgaggaaaattgtttctgctgatggccgatct
tctgaaatcaagcaaacacttgctggatgtctgacacggtcaatacctggacttgcctct
gaacttaagctatcaaccccaatatcaagtttggagcacgggatggggtgtttgttagac
actatgactttccttgatgcacttccggcattcagaatgaagcaatggcaagtaattgtt
ctcctgtttatagaagctttatctgtttgccggattccgtcacttgactcacaagtgtca
aatagtagaagtctgtttcacaaggtgcttgatcgtgctcagataaggtccaacgaatat
gagactttgaaagatcatatactaccgcttggtcgaacagcacagttttcaggcgagaat
gatgcttaa
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