Cucurbita maxima (winter squash): 111479694
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Entry
111479694 CDS
T05246
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111479694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111479694
03036 Chromosome and associated proteins [BR:
cmax03036
]
111479694
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111479694
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
111479694
mRNA degradation factors
5'-3' decay
Decapping complex
111479694
Chromosome and associated proteins [BR:
cmax03036
]
Eukaryotic type
Gene silencing
piRNA pathway
111479694
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
TFIIA
Motif
Other DBs
NCBI-GeneID:
111479694
NCBI-ProteinID:
XP_022980274
UniProt:
A0A6J1IYU3
LinkDB
All DBs
Position
Unknown
AA seq
497 aa
AA seq
DB search
MNNRGRYPPGIGAGRGGGVNANPSFQSRPHQQQYVQRNLVPNQQYQQQHHQNQHQHQQLQ
QHQQWLKRNQLGGGPADSNVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYRTEDVTAT
KGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIP
ALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKNLNIQVMVTTGGTSLKDDIMRLYQ
PVHLLVGTPGRILDLAKKGVCVLKDCSMLIMDEADKLLSPEFQPSIEHLIRFLPSNRQIL
MYSATFPVTVKDFKDRYLHKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQI
NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF
TRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELG
TEIKQIPPHIDQAIYCQ
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaacaataggggaaggtatccacctgggatcggcgctgggcggggcggaggcgtgaat
gcgaacccttcgtttcagtcaagaccacaccagcagcaatacgtacaaagaaatttggtg
ccgaatcagcagtatcaacaacagcaccatcagaaccagcaccaacaccagcagcttcaa
caacaccaacaatggctgaaaaggaaccagttaggtggcggtcctgccgattccaacgtt
gacgaggttgagaagaccgtgcagtctgaggctgttgattcgagttcacaagattggaag
gcaaggctaaagattccaccacccgatacacgctatagaacagaggatgtgacagctacg
aaaggaaatgagttcgaggactattttttaaaacgtgaattactcatgggaatctatgag
aaaggctttgaaagaccatctcctattcaagaagaaagtattccaattgctttaaccggt
agtgatattcttgctagagcaaaaaacggaactggaaagacagccgcattttgcattccc
gccttagaaaagattgatcaggataacaatgtaatccaagttgttatccttgttccgact
cgagagttggctcttcaaacttcacaagtttgtaaggaactcgggaagaatttgaatatt
caagttatggttacgacaggtggaaccagcttaaaggatgatatcatgcgattatatcaa
cctgttcatttattagttggaactcctggaagaatattagatcttgcaaaaaagggtgtg
tgtgtactgaaagactgttctatgcttattatggatgaggctgacaagctcttgtctcca
gagttccaaccttcaatagagcatttgattcgctttttgccttcaaatcggcagattctt
atgtattccgctacctttcctgttactgtgaaggacttcaaagatagatatcttcacaag
ccctatattataaacttaatggatgagctcactttgaagggtatcacccaattctatgca
tttgttgaagaaagacaaaaagttcactgccttaatactcttttctctaagctgcaaatt
aaccagtcgattatcttctgcaattccgtaaatcgagtcgagttgttagccaagaaaata
acggaacttggttattcttgtttctatattcatgcaaagatgctgcaagatcatcgtaat
agagtatttcatgacttccgaaatggtgcatgtagaaatcttgtttgtactgatttattt
acaagaggaattgacattcaagcagtaaatgttgttattaactttgattttcccaagaat
tcagagacatatctgcacagggttggaagatctggaaggtttggacatcttggattagct
gtgaatttaatcacttatgaggatcgtttcaatttgtacaggattgagcaagaacttgga
actgaaataaaacaaataccaccccatattgaccaggcaatctactgccagtaa
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