Cucurbita maxima (winter squash): 111480024
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Entry
111480024 CDS
T05246
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111480024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111480024
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111480024
mRNA degradation factors
5'-3' decay
Lsm complex
111480024
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
111480024
NCBI-ProteinID:
XP_022980750
UniProt:
A0A6J1IXE4
LinkDB
All DBs
Position
Unknown
AA seq
144 aa
AA seq
DB search
MSGGCVVLINSQSIMMVPSVLEYIFRTPCIGSYLDRKLLILLLDGRCIIGTMCTFDQYGN
VVVESAFERIFAENQYCDKPMGLLVVRGDNAIFIGEMDLSFPELPPHITAVSLPQILIAR
KAELQSSVFKRTLKKWMEELFDGI
NT seq
435 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggggttgtgtagttttgattaattcacagtcaatcatgatggttccgtcagtc
ctcgaatacatcttccgaactccctgcatcggttcatatcttgaccggaaactactgata
ctgcttcttgatgggcgatgtatcattggcactatgtgtaccttcgatcaatatgggaat
gttgttgttgagagtgcgtttgaaagaatttttgcagagaatcagtattgtgataagccc
atgggtttgcttgtagttcgaggggataatgctatttttattggggagatggacctcagc
ttcccagaacttcctccccatatcactgctgtctcgctacctcagattctaattgctagg
aaagcagagttgcagtcatcagtgtttaaaagaaccttgaagaaatggatggaggaactg
tttgatggtatttga
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