Cucurbita maxima (winter squash): 111480229 Help Entry 111480229         CDS       T05246                                  Name (RefSeq) symplekin isoform X1   KO K06100   symplekin Organism cmax  Cucurbita maxima (winter squash) Pathway cmax03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:cmax00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     111480229  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:cmax03021]     111480229    03019 Messenger RNA biogenesis [BR:cmax03019]     111480229 Transcription machinery [BR:cmax03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      111480229 Messenger RNA biogenesis [BR:cmax03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      111480229     U7-dependent histone pre-mRNA processing factors      111480229 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N DUF3811 Motif Other DBs NCBI-GeneID:  111480229 NCBI-ProteinID:  XP_022980921 UniProt:  A0A6J1IUZ3 LinkDB All DBs Position Unknown AA seq 1303 aa AA seqDB search MAGVLRERALSLLAAANNHGDLTVKISSLKQVKDIILSIEPSFAAELYSYLVELQSSPES LLRKLLIEVIEDIGLRAMEHSPLLMSVLLASLKDEDSVVAGQSIISGQKLFCGTLREMTL QFHQRGKVDRWLEEMWMRMLKFKDDVLAIAIEPGSVGKRLLALKFLETYVLLFTSDTNDP QKAISEGNGDVFNISWLAGGFSILDPVGLMSEASRMLGILLNLLQTSSVPGTYTVTVVSS LAAIARKRPVHYGHILSALLELVPSFEMVRGRHAASIQYSIRSALLGFLRCMHPAFVESR DRLLKALRAMNAGDAADQVIRQVDKMVKAADRASRDAWLAKDDQSSIQHNASVDLTRKRP RLLDDEELSNGREVSKQSRFGPDFHLISPNQKDGSLQNAVSNGTSVPALDVELTPAEQMV AMIGALLAEGERGAESLEILISNIHPDLLADIVITNMKNLPKASPPLTRHGDLPVTRQGS SHVKVLTPSAPLSSVQTSVATAQVPFSLVTSAGSTLAESTVNSLPVDSKRDPRRDPRRLD PRRGGVSSASSVEEESSNISDIDNSISLGKSASVPVTATIENSLVSPIAKTKVEEKIVET PFDLGTDQLTPKSNSPDRAKKVETILEISAPLDPMPSAVGKADDGLVAVNLLDDSAPKRD DTPSSMEYDQYSPSVTNAAAPEDTCEELPLLPPYVDLTPEQQITVRNLAAEKIFDSCKNS TGADCNQIRLAIIARLVAQVDADDDIVRMLEKQVAIDYQQQKGHELALHVLYHLRSLDIL DSVESSSFAVYEKFLLVVAKSLLDSFPASDKSFSRLLGEVPTLPNSTLELLRNLCYCDND DNHGNDTPDIDRVTQGLGTVWNLIVKRPYSRQACLDIALKCAMHSEVKVRATAIRLVANK LYRLSYISDRIEQHATNMFLSAVDDGDRTDVVPSPCVSIEQRAGAEGESQETSVCGSQVS DPGTSEYDSMRSSQPTVRSSSTSSLSEAERHISLLFALCVKKPRLLQFVFDAYGRASRSV KEAVHEHIPNLITALGSSDSELLRIISDPPKGSEHLLALVLQVLTRETMPSSDLIATVKH LYETKLKDVTILIPMLPSLSKNEVLPIFPRLVDLPLEKFQRALAHILQGSAHTRPALTPV EVLIAIHNIIPEKDGLALKKITDACSACFEQRTVFTQQVLAKALGHMVEQTPLPLLFMRT VIQAIDAFPTLVDFVMEILSKLVNRQVWRMPKLWFGFLKCAFQMQPHSFRVLLQLPPPQL ENALNKYANLKGPLAAYASQPSTKSTLSRPMLVVLGLENERHL NT seq 3912 nt NT seq  +upstreamnt  +downstreamnt atggctggagttctcagagaaagagcactgtctctcctcgccgccgctaacaaccacggc gatttaacggtgaaaatttcatctttgaagcaggtaaaggatattatactgtccatcgag ccatctttcgctgcagagctttactcctacttggtcgagcttcagtcctcccccgagagc ttactacgtaaattgttgattgaggtgattgaagacattggattaagagccatggaacat tctcctctgttaatgtcagttttattggcatctttaaaggatgaagactctgttgtagca ggacaatcaattattagtggccaaaaattattttgtggtactttaagagagatgacattg cagttccatcagcggggtaaagttgatagatggcttgaagaaatgtggatgagaatgttg aagtttaaagatgatgttttggcaattgctatagagcctggttctgtcgggaagaggttg ctggctttgaaatttttggaaacatatgttctactttttacgtctgacacaaatgatcca cagaaagctatctcagaaggaaatggggatgtttttaacatttcatggctagctggtggt ttttctattttggatccagtcgggttaatgtcagaagctagtaggatgcttggtattctg ttgaatttgttgcagaccagttctgttccgggtacatacacagtaacagttgttagtagt ttagcagctatagcaaggaaaagaccagttcattatggtcacattctatcggcactgctg gaactggttccaagttttgagatggtaagggggcgtcatgctgccagcattcagtattct ataagatctgcccttttgggattcctaaggtgtatgcatccagcttttgtagagtcaaga gatagattgctaaaggctttaagagctatgaatgctggagatgctgcagatcaggttatc aggcaagtggacaaaatggtgaaggctgcagatcgagcttcgcgtgatgcttggctggcc aaggatgatcaatcatcaattcagcataatgcatcagtggatctaacaagaaaaagacct aggcttctggacgatgaagaactttccaatggtcgtgaggtttccaagcaaagtcgtttt ggtccagattttcacctaatctccccaaatcaaaaagatggttctctgcagaatgccgtc tctaatgggacatctgttcctgcgttagatgttgaattaactccagcagagcagatggtt gccatgattggtgccttacttgctgaaggggagcgaggtgcagagtcgcttgaaattctg atttcaaatattcatcctgacttgttagctgatattgtcataactaacatgaagaacttg cccaaagcatcccctcctttaactaggcatggggacttgcctgtaactcgtcaaggaagt agtcatgtgaaggttctgacaccatcagccccattgagttctgtgcaaacttcagttgct actgcacaagttcctttttctttggtcacctcagctggttcaactttggctgagtctacc gtcaatagtctccctgttgattctaaacgtgatccaagaagggatccccgtcgccttgat cctcgccgtggaggagtatcttctgcttctagtgtggaagaggaaagttcaaatatatct gatattgacaactccatatctttgggaaaatctgcttcagttcctgttactgcgacgatc gagaattccttggtatctcctatagcaaaaacgaaagttgaagaaaaaatcgtagagacc ccattcgaccttggaacagaccaattaacccccaaatcaaattctcctgatagagccaag aaagtcgaaactatattagaaattagtgcccctctggatcccatgccttctgctgttgga aaagctgatgatggtttagtggccgttaatttgctcgatgactcagcgccaaagagggat gatacaccatcttccatggaatatgatcagtattctccatcagttacaaatgcagctgca cctgaagatacctgcgaggaattgcctctgcttccaccatacgttgacttgactccagaa cagcaaataactgtaagaaatttggcagctgaaaagatatttgattcatgtaagaattcc actggagcagattgcaatcagatacgcttggcaataattgctcgattggttgctcaggtt gatgctgacgatgatattgttcgaatgttggaaaaacaagtcgctattgattaccaacag caaaaggggcacgagcttgctttgcatgtcttatatcacctacgttcacttgatattctg gattcagttgaaagctcttcttttgctgtttacgagaagtttcttctagttgtggctaaa tctttgctagattcttttccagcttcagacaaatcttttagcagacttcttggtgaagtt ccaactttgcccaactctacattggaactcttacgtaacctttgctattgtgataatgat gacaaccacgggaatgatactcctgatattgaccgtgtcactcaaggccttggcactgtt tggaatttgattgtgaagcggccatatagtcggcaggcttgcttagatattgctctaaag tgtgctatgcattcagaagttaaggttcgagcaacagctattagactggtggcaaacaaa ctctaccggttaagttacatttcagataggattgagcagcatgcaacaaacatgttcctg tctgcagtagacgatggagataggacagatgtagtgccttcaccatgtgtatcaattgaa caaagagctggagcagagggggagagtcaggaaacatccgtctgcggttctcaagtttca gatcctggaacctcagaatacgattccatgaggagttcacaacctacagttcgtagcagt tcaacctcgtcactttcagaagctgaaagacatatttctcttctttttgctttatgtgtg aagaaacctcgtcttcttcagtttgtatttgatgcttatggacgggcttctagatcagtg aaagaggccgttcatgaacatatccctaatcttattacggccttagggtcatctgattct gaattgcttagaataatttcagatccgcctaaaggaagtgaacatcttttagcattggta ctacaggtgctaactcgagagacaatgccttcttctgatctgatcgcaaccgttaaacat ttatatgaaactaaactcaaggacgtgacaattctcattccaatgttgccctcactttcc aaaaatgaggttttacctatttttcctcgattggtggatcttccattggagaagtttcag agagcgttggctcacatattacagggttcagcacatacacgtccagctttaacacctgtt gaagtgttgattgccatccacaacataattcctgaaaaagatggccttgcattaaagaag ataacggatgcttgttcagcttgttttgagcaacgtacagttttcactcagcaggtttta gcaaaagccttgggccacatggttgaacaaaccccactccctcttctcttcatgagaact gtgattcaggcaattgatgcttttcctactctggttgattttgttatggagatactttcc aaacttgtaaacagacaggtctggaggatgccgaaactgtggtttggttttttgaaatgt gcatttcagatgcagccacattcctttcgagtactattacagttgccaccgccacaactt gaaaatgctttgaacaaatatgctaaccttaaaggtcctcttgctgcttatgccagccag cccagcacaaaatctactctctctagaccgatgctcgtagttctgggtcttgaaaatgaa aggcatttgtag

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