Cucurbita maxima (winter squash): 111480345
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Entry
111480345 CDS
T05246
Name
(RefSeq) uncharacterized protein LOC111480345 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111480345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111480345
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111480345
mRNA degradation factors
5'-3' decay
Decapping complex
111480345
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
111480345
NCBI-ProteinID:
XP_022981086
UniProt:
A0A6J1IVH7
LinkDB
All DBs
Position
Unknown
AA seq
812 aa
AA seq
DB search
MSRLIESSIMDGFGNGARVQVASTSKDLTRFGANSTEDALFDASQYAFFGKDMEEVELGG
LEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKLNDIGSGPRGVIGGGLLR
ENNEWACEDGFPNWIAQQGFNVETAQEGKRWSSHPHPSSLAESTSLYRTSSYPDQPQPQP
QQYHQQFSSEPILVPKSSYPSSGISPHASPNQHPSHLNMPFVPGGHHVVSLSPSNLTPPN
SQIAGFNSVSRFGGNMPQHSSGPSINGGPSSQWMNQTGMFPGEHVSHLNNLLPRQLSNQN
GFPQLPPQQQQQQHRLQHPVQPPFVGSLPGLQTHLLNSHSSSGPPHLMNKLEAMLGLPDM
RDQRPRSQKGRQTTHYAHQGYETNNFRSDFGWPFRRSKYMKAYELENIVRIQLAATHSND
PYVDDYYHQACLARKSAGAKLRHHFCPNQLRDLPPHARANSEPHAFLQVEALGRVPFSSI
RRPRPLLEVDPPSSTVSGSNDQKVSEKPLEQEPMLAARVTIEDGQCLLLDVDDIDRFLQF
NQFQDGGAQLRRRRQVLLEGLAASFHIVDPLSKDGHAVGLAPKDDFVFLRLVSLPKGRKL
LGKYLQLLVPGGELMRTVCMAIFRHLRFLFGSPDPAAADSVNDLAKIVSLRTHSMDLGAL
SACLAAVVCSSEQPPLRPLGTPAGDGASLILKSVLERATELLTDRHAASNYNITHRALWQ
ASFDEFFGILTKYCVNKYDSIMQSLLRQSPQNAASAVSDAAAAISQEMPVEVLRASLPHT
DEHQRKVLIDFAQRSMSVGGFNNSARNNFDSL
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagactaattgagtcatcgataatggatggtttcggcaacggagctagagttcaa
gttgcgtctacatccaaggatctcacgcgttttggagccaattcgacggaagatgctcta
tttgatgcatcacagtatgcattttttggcaaggatatggaggaagttgaattgggagga
ttagaagatgaagaggatgatactcttgctgctgggattgacgaggaggagtttttgttt
gataaagagagtgaggattttagacctccttctgatattgatgatcttgtttcttcattt
gaaaagttaaatgacattggaagcgggccaaggggagttattggaggcggattattgaga
gaaaataatgaatgggcatgcgaggatggtttccctaattggattgcccagcaaggcttc
aatgttgaaacggctcaggaaggcaaaagatggtcatcacatccccatccatcttccctt
gctgaatctacgtctctgtataggacatcatcataccctgatcagccacagcctcagcca
caacagtaccatcaacagttctctagtgagccaattttggtgccaaagtcttcatatcct
tcaagcggaatatctcctcatgcttctccaaaccagcatccaagccatctaaatatgcct
tttgttcctggtggacaccatgtagtatcgttatctccatcaaatctcactcctccaaat
tctcagattgccggttttaattctgtatcacggtttggaggaaatatgccacaacacagt
tctggcccctctattaacggtggaccatcgagccaatggatgaaccaaaccggcatgttt
cctggagaacatgtcagtcacctaaacaatttattgcctcgccagttatccaatcagaat
ggatttccacagttaccaccacagcagcagcagcagcagcataggttgcagcatcctgtt
cagcctccgtttgttggctctctaccaggtttacagacccatcttctcaattcacattcg
tcttcaggcccacctcacttaatgaacaagttggaagccatgcttggtctaccagatatg
agggatcaaaggcctaggtctcagaaaggtagacagactacacattatgcccatcagggt
tatgagactaataattttaggagtgactttgggtggcctttccgtagatccaagtatatg
aaagcttatgaattagagaatatcgttagaatccagcttgcagcgacacatagtaatgat
ccatatgtagatgactactaccatcaggcttgtcttgcaagaaaatctgcgggtgcaaag
ttgaggcatcatttctgtcctaatcaactaagggatcttccaccacatgctcgtgccaat
agtgagccacatgcttttcttcaggttgaagcacttggtagggttccattttcatcaatt
cgtagacctcgccctcttcttgaagttgatccgccgagttcaactgttagtggaagcaat
gatcaaaaagtttctgagaagccccttgaacaggagcctatgttggcagctagggttaca
attgaggatggtcaatgtctactccttgatgtggatgatatcgatcgtttcctgcagttc
aatcagttccaagatggtggtgctcagttaagaagacgtcgacaggtcctgttggaagga
ctggcagcatcatttcatatagttgatccactcagtaaagacggtcatgcggttgggctg
gctccaaaggatgatttcgttttcttgaggttagtttctcttcccaagggtcgaaaactt
ctaggtaagtaccttcagttgcttgtgccaggaggtgagcttatgcgaacagtttgtatg
gctatttttcgtcacttgagattcttgtttggaagtcctgatcctgcagcagcagattct
gttaatgatctcgcaaaaattgtttccttgcgaacccatagtatggatcttggagctctg
agtgcatgtcttgctgctgtagtttgttcctcagagcaacctccacttcgccctctaggg
acccctgctggagatggggcgtccttgattttgaaatctgttcttgagagggctacggag
ctcttaaccgatcgtcatgctgcaagtaattacaacattactcatcgagctctttggcag
gcttctttcgatgaattttttggcattctcacgaagtattgtgtgaacaagtatgatagt
atcatgcaatcattactccgacaatctccacagaatgcagcatctgctgtctcagatgca
gccgctgccattagtcaagaaatgccagttgaagtattacgagcaagtcttccccacacc
gacgagcaccagagaaaggtgttgatagattttgcccaacgctcaatgtctgttggtgga
ttcaacaacagtgctcgcaacaattttgattccttgtga
DBGET
integrated database retrieval system
