KEGG   Cucurbita maxima (winter squash): 111481134
Entry
111481134         CDS       T05246                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
cmax  Cucurbita maxima (winter squash)
Brite
KEGG Orthology (KO) [BR:cmax00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cmax03009]
    111481134
Ribosome biogenesis [BR:cmax03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    111481134
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_EML Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_C Beta-prop_TEP1_2nd NBCH_WD40 Beta-prop_DCAF4 WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_WDR90_POC16_2nd Beta-prop_VPS8 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_IP5PC_F Beta-prop_IFT140_1st Beta-prop_HPS5 WDR54 Beta-prop_SPT8 Beta-prop_LRRK2 Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_DCAF12 Beta-prop_SCAP Nucleoporin_N Beta-prop_WDR19_1st Beta-prop_WDR75_2nd DUF465 VPS8_N MavL-like PROPPIN
Other DBs
NCBI-GeneID: 111481134
NCBI-ProteinID: XP_022982251
UniProt: A0A6J1IYT8
LinkDB
Position
Unknown
AA seq 443 aa
MVLVVASSSVDSGIGCWDLHTGAEQLCYKSCASPAHGLVCVGERFLACSQLRDPAATSGS
VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY
RAVTCLEFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV
IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN
IIRVLKHSKGPVNNLLIVQHQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT
GVIIGRSGPPMESMGFSPISSHVMDHQITELQQQGSAATGMELERLKREYGKSMQMQQQW
RKLYDNLHQYCVNELLDGDQTKI
NT seq 1332 nt   +upstreamnt  +downstreamnt
atggtgctagtggtcgcttcgtcgtctgttgattcggggattggttgttgggacctccac
acgggtgcggaacaactatgttacaagtcttgtgcttctcctgcacatggtcttgtttgt
gttggtgaaaggtttctcgcatgctctcagcttcgtgatcccgctgccacctcaggctcc
gtactctactggtcttggtttaagcctcaagtagaagttaagagctttccggctgaacca
ataatggcattggcttccaacaatgagggtacatatatcgttggtggtggtttctctgga
gatatatacttgtgggaggttttgagcggtagactgcttatgaaatggcatgctcattat
agggcagttacttgcctagaattctctgaagatgactccctgctaatttctggctctgaa
gatggctgcgttagagtttggtcccttctaaaggtatttgatgatggatggcaaagggaa
tcaaaacatttgtatgaacatagtttcactgggcataatctacctgttactgatattgtt
attggctatggaggatccaatgctattataatctcttcctctgtggatcgtacttgtaag
gtgtggagcttatctaaggggaaattattaagaaatatcatatttccttcgatcattgat
gcaattgctttggatcccggtgaacatgtcttctatggtggtggtagagatgggaagatc
tacactgctgcgcttaatgctaaaagcccatccagcagtgattatggattgcatattctc
ggctcattatcaaatcagagcaagtctgttacttcattggcatactgctcaagtggtaat
ttattgatctctggatctgaggacggagcaatcaaagtttgggataccagaaccaataat
attattcgtgttctcaaacattcaaaaggtcctgtaaataatttacttattgttcaacac
cagctcctcccgacttcacagctaaatccaacctcccaaggttctttgagaaagcatcga
tcactattacctcctgcccttgcaaaattcggaaactcgaaggacgacgatgaagacact
ggtgttatcattggtcgatcaggtcctcccatggaatccatggggttttcccccattagt
tctcatgtgatggatcatcaaatcacagaacttcagcaacagggttctgctgccacagga
atggagttggaaagacttaagcgtgaatatggaaaatccatgcaaatgcaacagcagtgg
agaaaactgtacgacaatttacatcaatattgtgtaaatgagcttctggatggcgatcaa
actaaaatttag

DBGET integrated database retrieval system