Cucurbita maxima (winter squash): 111481563
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Entry
111481563 CDS
T05246
Name
(RefSeq) uncharacterized protein LOC111481563 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111481563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmax03021
]
111481563
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111481563
Transcription machinery [BR:
cmax03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111481563
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111481563
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_4
zf-C2H2_REST
zf-met
AC_N
Motif
Other DBs
NCBI-GeneID:
111481563
NCBI-ProteinID:
XP_022982821
UniProt:
A0A6J1J0F6
LinkDB
All DBs
Position
Unknown
AA seq
1079 aa
AA seq
DB search
MEMESSRRPFDRTREPGLKKLRLADEADHGGNINGRPFPQRPVVSGTNIAQSRFRASDRD
PGSSDSGRVGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISAT
ICANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHTSMRH
LFGTWKGVFPPQTLQIIEKELGFVSSGSSSSGTITSKPDLQAQRPPHSIHVNPKYIERQR
LQQSGRVKGMTSDGTGATTVTQDVAQAKISSGRLWADTPIKGLDIQRPLRDAPNDLAQEK
KVAAAYLDYECGSDLSRTSGVGRRVVDEGQDKSWSLAGNNLAEKLSGQRNGFDIKLGYEN
YPAPKSANTGARLLPMQKFSSGSSNRVLSTNWKNSEEEEFMWGEMNSMLTGHGAPAIASS
TGKDQCTPEDSDNSGTDNKPLSIRDTGASVDREASFDSQSSEKRELGDSGQQRSSMWQFQ
EAISLDGLRGRVPRKNSAQSGGIGATLTAMSGANSSVDQMGGRSQITSSNIGASGHGFLN
KGGSGSLGTVGHPRFPSQSVALPSGQPPLHQRPPSPLVDHVAHKKQSHKTSFPNLDPRRR
HIRDAALGLHPNIRPDNLQKPQPQDLQASASSIPASQTRHRSLKPEVTQSELSSQHAVSI
PDTDFGPPSSTGTVLELLPAEILGEPSTSSLLAAIMKSGILSNHSIISSMQQNFSSQDVG
NMQPRSSGNPPLPSQSSPAHTQSTFSEPKTVGESSLDPPSLESTSTLVKLSQIKVEDTPL
PSDPVPPSSTMNSASIETSNVVNDDSSPISNLLSSLVAKGLICASKGELASNVTSQMPSQ
PEHLKSGDVVTCSIPVPSIPIPSSSQSSIRPESPSKAAAKSSTTPPPSATTEINNLIGYE
FSSHVIRKFHPSVISGLFDDIPFQCKICGLGLKCEEQLDTHLWWHMSRTESNNSCRAPRR
WYPSSVDWVSGNARLLLDVATSLDKSSMMEEDNEPMVPADEDQFACVLCGELFEDFYNLE
LGKWMFKGAMHITIPSVGSEVGSTNERVAIGPIVHISCLTESSIHELGLATDIKMEMDV
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagctcgcggagacctttcgatcgaacgagggaaccgggtttgaagaag
cttcgactggccgatgaggctgaccacggtgggaacattaatggccggccgtttccgcag
agaccagttgtttccggaaccaatatcgctcaatccagatttcgagcaagcgatagggat
ccgggaagcagtgattctggtcgagtggggtatcagcctcagccgccgcagcatcaggag
cttgtgagccagtacaggacagcccttgctgagctgactttcaattccaaaccaatcatc
acgaatttgaccataatcgcgggtgaaaatctccaggctgcaaaagcgatctctgccact
atttgtgccaacattctcgaggttcccactgagcagaagctgccatcactttatctattg
gacagtattgtaaagaatattggaagagattacataaaatactttgcagcaagactaccg
gaggtattctgcaaagcttataggcaagtcgacccatctgttcatacaagcatgagacat
ctttttggcacctggaaaggagtgtttcctcctcaaactctccagattatcgagaaagaa
cttggcttcgtgtctagcggtagttcttcttctgggaccataacctcgaagccagatttg
caggcacaacgtccaccccatagtatccatgtaaatcccaagtatattgagaggcaacgc
cttcagcagtcaggcagggtgaaaggaatgactagtgatggtactggcgcaacaactgta
actcaggatgttgcccaagccaaaattagttctggacgcctgtgggcggatacaccaatt
aaagggcttgatattcagcgtccacttagagatgcaccaaatgatttggcacaagagaag
aaagtcgccgctgcatatctagactatgaatgtggttctgatctttcaaggacatcaggt
gttggaaggagggtcgttgatgaagggcaagacaaatcttggtctttagcaggaaacaat
ttggctgagaaattatctggacaaagaaatgggttcgacatcaagcttggatatgaaaat
taccctgcacccaagtctgcaaacactggtgcacgtctactgcccatgcaaaaattttca
agcggcagcagcaacagagtgttgtctactaactggaagaactctgaggaagaggagttt
atgtggggtgaaatgaactctatgttgacaggtcatggtgcacctgccatcgccagtagc
accgggaaagatcaatgtactcctgaggattcggataattcgggtactgacaataagcca
ttaagcatacgggatactggggcaagtgttgatagggaagcttcctttgattcacaatca
tctgagaagagagaactaggggattctggacagcagaggtcatcaatgtggcagttccag
gaggcaatatctctggatggcctgagaggcagggttcctagaaagaattcagctcaatca
ggaggtattggtgccactctaaccgcaatgtcaggtgctaactcttctgtggatcaaatg
ggaggacgatcacagatcacatcatctaatattggagcttcaggacatgggtttctgaat
aaaggaggttcagggtcccttgggactgtaggccatccaagatttccatcacaaagtgtt
gcattaccatctggacagccacccttgcaccagcgccccccttcaccattagtggatcat
gtcgctcataaaaaacaaagccataaaacttcatttcctaatcttgatccacgtagaagg
catatacgggatgctgcccttggcctgcatcccaacattcggccagataaccttcaaaaa
ccacagcctcaggacctacaagcttcagcttcatccatacctgcttctcaaaccaggcac
cggtcactgaaacctgaagtcacacagtcggaactttctagtcagcatgcagtatcaatt
ccggacaccgattttggaccgccctcatcgactgggacagttctagaactcttacctgca
gaaattttgggagagccaagcactagtagtttgttggctgctataatgaaaagtggaatt
ttgtccaaccattcaataatcagtagcatgcaacagaatttcagctcccaagatgtggga
aatatgcaaccccgttcaagcggcaaccctcctctaccaagtcagtcttctcctgcccat
actcagtctacattctcagagccaaagactgtgggcgaatcttcattagatcctccatct
cttgaaagcacatcaacgctggttaagttatctcagattaaggtagaagacacaccgttg
ccatctgatccagttcctccttcatctactatgaatagtgcatccattgaaacttcaaat
gtggtaaacgatgattctagtccaatttctaaccttttgagctcattggttgcaaagggc
ctcatatgtgcttctaaaggagaattagcaagtaacgttacatcccagatgccttcacag
cctgaacatttgaagtcaggtgatgttgtgacttgttctataccagttccttccatccct
attccctcttccagtcaatcatctataagacctgaatcaccttcaaaagctgctgctaag
agctccactactccacctccatctgccacaactgagataaacaacctcataggctatgag
tttagttcacatgttattcgcaaatttcatccatctgtgatcagtggactctttgacgat
attccatttcaatgtaagatctgcggtcttggactgaaatgtgaagaacagttggatacg
cacttgtggtggcacatgtcaagaactgagtcaaacaattcatgtagggcaccaagaaga
tggtatccaagttcagttgattgggtatctggaaatgctagacttctacttgacgttgcc
acttctctggacaagtccagcatgatggaagaagataacgagccaatggttccagcagat
gaagatcaatttgcctgtgttttatgtggtgagctttttgaagatttttataatctagag
ttgggtaagtggatgttcaaaggagcaatgcatatcacaatcccatcagtgggtagtgag
gtaggaagcacaaatgaacgagttgctataggacccattgtgcacataagttgcttaact
gaaagttcaatacacgagttgggactggcaactgatattaagatggaaatggatgtatga
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integrated database retrieval system
