Cucurbita maxima (winter squash): 111481566
Help
Entry
111481566 CDS
T05246
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111481566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111481566
03012 Translation factors [BR:
cmax03012
]
111481566
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111481566
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111481566
Translation factors [BR:
cmax03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111481566
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
BEX
AAA_19
ATPase
Motif
Other DBs
NCBI-GeneID:
111481566
NCBI-ProteinID:
XP_022982827
UniProt:
A0A6J1IXL8
LinkDB
All DBs
Position
Unknown
AA seq
1033 aa
AA seq
DB search
MSLRTAVSSHTLLWKRPFLLPRLSVLRPVISAFAMSNRPNYQGGRRGSSSGGRRGGGRRG
GGGGSGGRGGGGRGEQRWWDPVWRAERLRQNAAEMEVLNEDEWWTKMDQMKRGGEQELII
KRNYSRRDQEILYDMAHQQGLYFHAYNKGKALVVSKVPLPDYRADLDERHGSTQKEIRMT
TDIERRVGNLLDDMQGLGREHSVSSTASAEGGKQTPTSINNTKPVYKLETDLAKEKLSAE
LKQKQEEMKVSDGLKAMLAFRERLPAFNVKSEFIKAMTENQVLVVSGETGCGKTTQLPQF
ILEEEISKLRGADCRIICTQPRRISAISVAARISSERGENLGETVGYQIRLEAKQSAQTR
LLFCTTGVLLRQLVQDPQLTGVSHLLVDEIHERGMNEDFLLIILRNLLPQRPDLRLILMS
ATINADLFSKYFANAPTLHIPGKTFSVTEFFLEDVLEKTRYNIKSEFENFEGNSSRRRRQ
QESKKDPLSELFEDVDIDAQYKAYSSSTRKSLEAWSGAQLDLSLVESTIEYICRHEGYGA
ILVFLTGWDDISKLLDKVKANSYLGDSGKFLILPLHGSMPTINQREIFDSPLPAKRKIVL
ATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPG
VCYRLYPKIIHDAMLQYQLPEILRTPLQELCLHIKSLQLGTAGSFLAQALQPPDPLAVQN
AIELLKTIGALDDMEELTPLGRHLCSLPLDPNIGKMLLMGSIFQCLNPALTIAAALAHRD
PFILPINRKEEANDAKKSFSGDSCSDHVALLKAFEGWKDAKRNGAERSFCWENFLSPVTL
QMMDDMRMQFLDLLSDIGFVNKSRGPSAYNQYSHDLEMVCAVLCAGLYPNVVQCKRRGKR
TAFYTKEVGKVDIHPGSVNAGVHIFPLPYMIYSEKVKTTSIYIRDSTNISDYALLLFGGN
LVPTKTGDGIEMLGGYLHFSASKNVLDLIKKLRGELDKLLNRKIEEPRFDITTEGKGVVA
AAVELLHSQVVHH
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgtccctccgaaccgctgtttccagtcacactctgctctggaagcgcccatttcttctg
cctcgactttctgtacttcggccagttatttcagcattcgcaatgtcaaatcggccaaac
tatcaaggtggccgtcgtggaagctcatctggaggaagacgcggcggtggccgacgcggc
ggaggtggaggcagcggaggcagaggcggcggaggtagaggcgagcaacgttggtgggac
ccggtctggcgcgctgagcgtctgcgacaaaatgctgctgagatggaggttcttaatgaa
gatgaatggtggactaagatggaccagatgaaaagaggaggggaacaagagttgataatt
aagcgtaattatagtcgaagagaccaagaaatcctttacgacatggctcatcagcagggt
ctctacttccatgcatataataaggggaaagcccttgtggttagtaaagttccattgcca
gattaccgggctgatctggatgaacgacatgggtccacacaaaaggagattcgaatgact
accgatatagagaggagggttggaaatcttctggatgacatgcagggtctgggaagggag
cacagtgtttcttctactgcatcagctgaaggaggcaaacagactccaacttctataaat
aacacaaaacctgtctacaagttggagactgatttagcaaaggagaaacttagtgctgaa
cttaagcagaagcaggaagagatgaaagtaagcgatggcttaaaagcaatgctggcattt
agagaaaggcttcctgccttcaatgtaaaatctgaatttataaaagcaatgacagaaaac
caggtattggttgtttcaggagagacaggttgtggtaaaaccacacagctccctcaattt
attttggaggaggagatatcaaaacttcgtggtgctgattgtagaataatatgcacccaa
cctcggcgcatctctgctatttcagttgctgctcgtatatcctctgaaaggggagaaaat
cttggtgaaacagttggatatcaaatacgactggaagcaaaacaatcagcccagactcga
ctattattttgcaccactggagttctactccggcagttggtccaggacccacaattgact
ggtgttagccatttgcttgtggatgaaatacatgaaaggggcatgaatgaggatttttta
ttaataattctgcgcaaccttcttcctcagcggccagatttgcgtcttattttaatgagt
gccaccattaatgcagatttgttctccaaatactttgcgaatgccccaacactacacata
ccaggaaaaactttttctgtgacagagttttttttagaggatgtgctggagaaaactcgt
tataatatcaagtcagagtttgaaaactttgaaggaaattcaagtagaagaaggagacaa
caagaatccaagaaggatcctttatcagaattatttgaggatgttgatattgatgctcag
tacaaagcttatagttcatctacgagaaagtcacttgaagcctggtctggggcacaactt
gatttgagtctggtggaatcaactattgagtatatttgtcgccatgaaggttatggtgct
atacttgtatttcttactggttgggatgacatttctaaactactcgacaaagttaaagca
aacagttatcttggagattctggaaagttcttaatccttcctttacatggttccatgcca
accattaatcagcgagaaatatttgatagtcctctccccgccaaaagaaaaattgtgctg
gcaactaacattgctgagagtagtatcaccatagacgacgttgtctatgtcatagattgt
ggaaaagcgaaggaaacgagttatgatgctctgaacaaacttgcttgtctgctaccttca
tggatttccaaggcttcagcacaccagaggcgaggtcgtgctggtcgtgtgcaacctggt
gtttgttatagactctatccaaaaattatccacgacgcaatgcttcagtatcagttacct
gaaattctgagaactcctttacaagaactttgtctgcatatcaaaagtttgcagctagga
actgctgggtcatttttggcacaggcattacagccaccagaccctcttgctgtccagaat
gccattgaacttctcaaaacaattggtgctttagatgatatggaggagcttacaccactg
ggtcgtcatctttgctccttacctctggacccaaatatagggaagatgcttctcatgggt
tctatatttcaatgcctgaatcctgccttgaccattgccgctgctctggctcaccgcgat
ccatttattttgcccattaataggaaagaggaagcaaatgatgcaaagaaatcattttcg
ggtgattcttgcagtgaccacgtcgctcttcttaaagcctttgaaggatggaaggatgca
aaaagaaatggagctgaaagatcgttctgctgggaaaacttcttatctccagtaaccttg
cagatgatggatgacatgagaatgcagtttctagatctattatctgatattggctttgtg
aacaagtccaggggtccaagtgcatacaaccaatacagtcacgatttggagatggtgtgt
gcagtgctttgtgctggactataccctaatgtcgtacaatgtaaaagaagaggaaagagg
acagccttctatactaaggaagttgggaaagtggatattcatcctggatctgtcaatgca
ggggttcatatcttccctctgccttacatgatttacagcgagaaggtcaaaacaactagt
atatacatcagagactctaccaatatatcagattatgcccttttgttgtttggtggtaat
cttgtacctaccaaaactggagatggcattgaaatgctcggtggctacctccatttctct
gcttcaaagaatgttttagatttaataaagaaattgcgcggggagcttgacaagcttttg
aataggaagatcgaggagccgcgttttgacattactacagaaggaaagggagtggtggca
gctgcagtcgagttacttcacagtcaagttgtacatcattaa
DBGET
integrated database retrieval system
