Cucurbita maxima (winter squash): 111481806
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Entry
111481806 CDS
T05246
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 7-like
KO
K13126
polyadenylate-binding protein
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03015
mRNA surveillance pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111481806
09123 Folding, sorting and degradation
03018 RNA degradation
111481806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111481806
03041 Spliceosome [BR:
cmax03041
]
111481806
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111481806
mRNA cycle factors
Stress granule specific factors
111481806
Spliceosome [BR:
cmax03041
]
Complex C
Other components
Complex C specific factors
111481806
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_occluded
RRM_5
RRM_RdRP1_2
DUF7373
Motif
Other DBs
NCBI-GeneID:
111481806
NCBI-ProteinID:
XP_022983173
UniProt:
A0A6J1J708
LinkDB
All DBs
Position
Unknown
AA seq
637 aa
AA seq
DB search
MAAVSQTAVHASPASLYVGDLHPDVTDGQLFDSFSGFKSLASVRICRDSATGRSLSYGYV
NFMSPQDATNAMEAMNHRMLNGRAIRVMWSHRDHGARKSGIGNVFVKNLSDSINGLGLQE
LFKKFGNVLSSKVVTSDDGKSKGYGFVQFESEDSAKTAIESLNGFTIGDKQIYVGKFICK
SERVLANPDFKYTNLYVKNLDSEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINF
VNSDDAKQALEALNGSQLGSKRIYIARAQKKTEREEVLRRRDEEKCKEQVLKYKGSNVYV
KNIDDGVTDEELRVLFSPCGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNSLQGYM
FHGKPLYLAIAQRKEDRQMQLRLQFAQRMAAMLGQSTLFPGGYPAPGVVPQVPSRSGLTF
QPLGMSPAWRPNAFTSPARPAFQPTPVPLIPNASRQPRQNRGKINGPMLSHQNGVQSVFY
MHNSQDAHQPGVTDKSSGNLQVSYSISHKPSKNVVIIWCRPCERNKTSGVSAAAFNSAGX
LSSSPPDQQKQILGEHLYPLVQKCKPAAKITGMLLEMNNSELLLLLESPESLVAKVEEAV
QVLKISKSKLSNQDSLDFIPAELAVSAAKREPKLLQL
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtttctcagacggcggttcatgcctctccggcttcgctctatgttggcgac
cttcatcctgatgtcactgatggtcagctctttgattctttctctggattcaagagcctc
gcctctgttcgtatctgtagagattccgccactggacgctctctctcttatggctacgtc
aatttcatgtctccgcaagacgcaaccaacgcgatggaggcaatgaatcacagaatgctc
aatggaagagcgattcgagtcatgtggtcacaccgcgatcatggtgcaagaaaaagtgga
attggaaacgtgtttgttaagaacttgagcgattcaatcaatggtttaggacttcaagag
ctatttaagaaatttggaaatgttctgtccagcaaagtagtcacatccgatgatgggaag
agcaaaggatacggctttgttcaatttgagtctgaggattccgcaaaaactgccatagag
tcactgaatggttttaccattggggataagcagatatatgtcggaaagtttatctgtaag
agtgaacgagtcttggccaatcctgattttaaatacaccaatttgtatgtgaaaaatctt
gactcagaaatcggggaagagcatttgcaggaaaagttttctgagtttggaaaaatttcc
agcatgattatttcaagggatgagaatggaatgtcaagaggttttggttttataaacttt
gtgaactctgatgatgcgaaacaggcattagaagcacttaatggatcgcaactgggttct
aagcgtatctacattgcacgggcacagaagaagacagagcgtgaggaagtattacgtcga
cgtgacgaagagaaatgtaaagagcaggtcttaaaatataagggctcaaatgtgtatgtg
aagaacattgatgatggtgttactgatgaagaactaagggtgcttttcagtccttgtggg
accatcacttcatcaaaacttatgcgagatgacaagggaataaacaaagggtttggattt
gtctgcttctctaatcctgacgaagctaaaagagccgtgaacagtttgcaaggatatatg
ttccacgggaagccactctatttggctatagcacaaagaaaagaggatagacaaatgcaa
ctgaggcttcagtttgcacaacggatggcagcgatgctagggcagtcaacactttttccg
ggtggatacccagcaccaggtgttgtcccacaagtaccatctcgttcaggattgacgttt
cagcctttaggaatgagccctgcgtggagacctaatgcttttacatctcctgcaagacct
gcttttcaacctacacctgtacctcttattccgaatgcttcgaggcaaccgaggcaaaac
agaggcaaaataaatggaccaatgctttctcatcaaaatggtgtccaatctgtcttttat
atgcacaattcacaagatgcccatcaaccaggagttactgataaatcatccggcaatctg
caggtaagctattctatcagtcataaaccatccaaaaatgtagttatcatatggtgtcgc
ccatgtgaaagaaacaaaacttctggagtctcagctgctgcttttaattctgctggantc
ctttcttcctctcccccagaccaacaaaaacagatccttggggagcatctctaccccctt
gtccaaaaatgcaagccggctgcgaagattactgggatgcttctggagatgaacaactcg
gaattactgcttctgttagagtcacctgaatctctagttgccaaggttgaagaagcagtg
caggtgcttaagatctcaaagagtaagctgtccaaccaagactcgctcgatttcataccg
gctgagcttgcagtcagcgcagctaaaagggaaccaaaactgctccaactttaa
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