Cucurbita maxima (winter squash): 111482572
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Entry
111482572 CDS
T05246
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111482572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111482572
03012 Translation factors [BR:
cmax03012
]
111482572
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111482572
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111482572
Translation factors [BR:
cmax03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111482572
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
OB_NTP_bind
HA2_N
nSTAND3
AAA_19
ATPase
AAA_22
Ank_2
Ank_5
ResIII
R3H
PhoH
AAA_7
T2SSE
ABC_tran
AAA_25
NACHT
Motif
Other DBs
NCBI-GeneID:
111482572
NCBI-ProteinID:
XP_022984162
UniProt:
A0A6J1J1G0
LinkDB
All DBs
Position
Unknown
AA seq
1207 aa
AA seq
DB search
MVKKKPKNGGQKPKFTAVENVGSAIEKALRRFSSSNDEVFTFNADDLKRGHYLVHRICQE
MHMISKSSGHGDQLRISVYKSKPQIDTMKFSEKSKNVFDDLFSTYPPVDEESGEATTGEH
KKKADKQRRKKDDILFRPSMSKEEIMKKWESYTDRVKSVANLKKITEERSKLPIASFQDV
ITSAVKSHQVVIITGETGCGKTTQVPQFLLDYMWGKGEACKIVCTHPRQISAMSVAERIS
YERGENVGSDIGYKTWLDRHGGRHSSVILCTSRSLLRVLIPEGLEASERRRKKVLSNLTH
IIVDEVHERDCCTDFILTILRGLLPSYPHLRLILMSATISAKRFSRYFGGCPIIDVPGIT
FPVKNFYLEDVLSIVKSQKENHLDDKIMGVLDEVRELTEEDKLALDEAIHTAWLNDEFDP
LLELVAKPGSSQIFNYQHSVTGLTPLMVLAGKGRVSDVCMLLSFGAICELCAKDGTTALE
LAERGDQKETAKAIREHLESSISNSKEEQRLIDTYLEKNSNSVDIALLEQLLEKICRDSK
GAILVCLPGWNEICKTLDRLSDNPLFKDASKFLIIPLHSTLPYKMQKKVFSQPPPGCRKI
ILSSNIAETAITIDDVVYVIDSGWNEEKSYDPYNNVSTFQLSLISKACAKQREGRAGRCQ
PGICYHLYSKSRASSLPDFQVPEIKRMPLEELCFQAKLLDPNRRIERFLRKTLDPPVLDT
IDNAILVLQDIGALSQDERLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACVSD
CKDPFTHPTLRSTRRKADAAKAELASLYGGHSDQLAVVAAFDCWKNAEERGQESRFCSKY
YISRSTMSKLSCMRKQLKMELVQNGFMPKDSSTCSLNARDPGVLHAVLVAGLYPMVGRLR
PPLMKGRQAVVVTRSRGKVLLHGQSLNFEPSLKLTDRHPLIVFDKITRGDGGTDIRKCTV
VGPVPLLIVAKEIAVGPAQEKDNGKGGIENDHDGNEEIDIYKTFEEKMDIENKLNQQPEE
MVMSSPNNKVTVVVDGWLHFLSKALDIAQLYCLRDRLSSAILFKVKHPNEALPPVLGASM
QALASILSYDGLSGISLEPVETSTSMVNPTDISRFLPGRSTGTHKMSRREPKRFKRCKRP
QNQDATLQQRAQECNTRKQSKSPKEQKVAQQQNLPSGDLSLNGYPSGRPSSPKGSTRGTS
LKRRRGN
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagaagaagccaaagaacggagggcaaaagccgaagttcacggcagttgaaaat
gtcggcagtgcaatagaaaaggcactcagacgattttcatcgtcaaacgacgaagttttc
actttcaacgctgatgatttgaagcgtggacattatcttgttcatcgaatctgccaggaa
atgcatatgatatcaaagagttctgggcatggagaccaactacgtatttctgtatataaa
tccaaaccgcaaattgacaccatgaaattttctgaaaagtccaaaaatgttttcgacgat
ttatttagtacgtatcctcctgttgatgaagaatcgggcgaggcaacgactggggaacac
aaaaaaaaggcggataaacaaaggcgaaagaaagatgacattttgtttaggccgtctatg
agcaaggaagagataatgaagaaatgggaatcctatactgatagagtgaagagtgtcgct
aatctgaaaaagatcacagaagagagatctaagcttccaattgcatcctttcaagatgtc
attacttcagcagttaaatctcaccaggtcgttatcataactggtgagactgggtgtgga
aagacaacacaggtccctcagtttcttttggattatatgtggggtaagggagaagcatgt
aagatagtctgtacccatcctcgacaaatatccgctatgtcagttgctgagcgaatctcc
tatgaaagaggagaaaatgttggaagtgatattggatataagacatggctggataggcat
ggtggcaggcactcgtcagtcatactctgcacatctcgtagtcttttaagggtgctgatt
ccagaagggttggaagcttcagaaaggaggaggaaaaaagttctatctaacttaactcat
attattgtggatgaagttcatgaaagggactgctgcactgacttcattttaacaattttg
agaggcttgcttccatcatatcctcacttacggctgatactaatgagcgctacaatcagt
gctaaacggttttcgagatactttggtggctgtccaatcatcgatgttcccggaatcacc
tttcctgtaaaaaatttctatctggaggatgtactttctattgtaaaatctcagaaagag
aaccaccttgatgataagataatgggtgttttagatgaggtacgtgagctaactgaagaa
gacaagcttgctttggacgaagcaattcacacggcttggttgaatgacgaatttgatccc
cttctagaattggttgctaaacctggatcctctcaaattttcaattatcagcattctgtg
actggactaacacctctaatggttcttgctggaaaaggtagagtttctgatgtttgcatg
ctgctatcttttggggccatatgtgaattatgtgccaaggatggcacaacggcgttggaa
ttggctgaacgaggagatcagaaagaaactgctaaagcaatcagagaacatttggaaagt
tccatatccaactccaaggaagaacaacggttgattgatacatatcttgaaaaaaattct
aattctgttgatattgctcttttagagcagctgttagaaaaaatatgtcgtgattcgaaa
ggagctattcttgtttgtcttcctgggtggaatgaaatctgcaaaactctagatagatta
tcagacaatcctcttttcaaagatgcatcaaaatttttgataatacctcttcattcaact
cttccttataaaatgcaaaagaaggttttcagccaacctcctcctggttgccgcaaaatt
attctgtctagtaatattgcagaaacggccattaccattgatgatgtagtttatgttata
gacagtggatggaatgaagaaaaaagttatgatccttacaataatgtttctacttttcaa
ttatctttgatatcaaaggcttgtgccaagcagcgtgagggtcgtgctggtcgctgtcag
cctgggatatgctatcacctttattcaaagtcccgtgcgtcgtctcttccagattttcaa
gttcctgaaatcaagagaatgccattagaggaactctgttttcaggcgaaattgcttgat
cccaatcgtcggatagagagatttttgcggaagactttggaccctccagttttagatact
atcgataatgcaatcttggtccttcaggatattggggctttgtcacaagatgagagactg
actgagcttggggagaaactaggttcattgcctgttcatccagtaacaagcaagatgctt
atcttcgccatattgatgaactgcctcgatcctgctctaactctggcttgtgtttcggac
tgcaaggaccctttcactcatccgacgttacgaagcactagaaggaaagctgatgctgct
aaagcagagcttgcttctttgtatggtggccatagtgatcaactagctgttgtagctgca
tttgattgctggaaaaatgcagaagaaaggggtcaagagtcccgcttctgttctaaatac
tacatttctcggagcactatgtcgaagctatcttgcatgcggaaacaactcaaaatggaa
ctagttcagaatggttttatgcctaaggatagttcaacttgtagcttaaatgctcgtgac
cctggcgtgctccacgccgtccttgtggctggtttatatccaatggtgggaagattacgt
ccgccccttatgaagggaagacaggctgttgtagtaactcgttcaaggggcaaagttctt
ttgcatggacagtccctcaactttgaaccatcacttaagctaaccgatcgtcaccctctt
attgtttttgacaagataacccgtggggatggtggtacagacataagaaaatgtactgtt
gttgggcctgtcccattattaattgttgctaaggagattgctgttggccctgctcaggag
aaagataatggtaaaggtggtattgaaaatgaccatgatggcaacgaagaaatcgacata
tataaaacatttgaagagaaaatggacatcgaaaataaattaaatcaacaaccagaagaa
atggttatgtcctcccctaataacaaggtaactgtggttgtcgacggttggctgcatttt
ttgtcgaaggcgctcgatattgcccagttatactgcttgagagatcgattatcttcagca
atcttattcaaagtaaagcatccaaatgaagctcttcctcctgttcttggtgcctctatg
caggccttagcttccattctatcttatgatggcttatctggcatttcattagaacctgta
gaaacgtcgacgtcaatggtaaatccgactgatatcagccgttttttacctggtagatct
acaggaacacataagatgtcacgtagagagccgaagcgattcaagcgatgcaaacgccct
caaaaccaagatgctaccctgcagcagcgcgctcaagagtgcaatacacgtaaacaaagc
aagtcccccaaggagcaaaaggtagcacaacagcagaaccttccatcaggagacctcagt
ttaaatgggtatccatcaggcagaccatcaagccctaaaggtagcacgcggggtacctct
ctaaagcggcgacgtggtaactaa
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integrated database retrieval system
