Cucurbita maxima (winter squash): 111482906
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Entry
111482906 CDS
T05246
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03015
mRNA surveillance pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111482906
09123 Folding, sorting and degradation
03018 RNA degradation
111482906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111482906
03041 Spliceosome [BR:
cmax03041
]
111482906
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111482906
mRNA cycle factors
Stress granule specific factors
111482906
Spliceosome [BR:
cmax03041
]
Complex C
Other components
Complex C specific factors
111482906
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_Nup35
RRM_7
PABC_AtC3H46
PH_35
Motif
Other DBs
NCBI-GeneID:
111482906
NCBI-ProteinID:
XP_022984704
UniProt:
A0A6J1JBB3
LinkDB
All DBs
Position
Unknown
AA seq
655 aa
AA seq
DB search
MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM
LLNDKQVFVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDIFSEFGTITSIVVM
RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT
MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST
PEEASWALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVSMAASVAPRMPMYP
PGGPGIGQQLFYGQGPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRP
GGRRAGAVQQNQQPVPMMQQQMLPRGGRVYRYPPGRGMPDVPMPGVAGGMFSVPYEMGGM
PMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEM
DQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAGNTADQLASLSLTENLVS
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcaggtgcaatctcagcctcagaatgctatttccggcatcaatccagcggcg
aatggtggtgccaattttgtgactacttctttgtacgtcggagatctggacctcaacgtc
acggattcgcagctttatgatatatttaatcaggtgggtcaggtggtttcggttcgcgtt
tgccgagacttgacgacccgacgatctcttggttatggttatgtaaactacagcaaccca
caagatgctgcaagagcattggatgtgctgaattttacccctcttaatggaaagcctata
agagttatgtattctcaccgtgacccaagcattcgcaaaagtggggcaggaaatatattt
atcaagaatttagacaaagcaattgaccacaaagctctgcatgatacgttttctgcattt
ggtagtatcctgtcctgcaaagtggctttagattcctctggccagtcaaaaggctatggt
tttgtgcaatttgacaatgaggagtctggtcagaaagcaattgagaagctgaacggcatg
ctgttgaatgataagcaagttttcgtaggaccctttcttcgtaagcaagaaagagacggc
gttgttgacaagtcgaaatttaacaacgtttttgtaaagaatttttctgagacaacttct
gaagaagaattgaatgatattttttctgaatttgggacaatcaccagtattgttgtgatg
agggatgctgatggaaaatcaaaatgctttggatttgtgaattttgaaagtgccgatgat
gctgctagagcagttgatgcccttaatggaaagttagttgatgataaggagtggtatgtt
gggaaagcccagaaaaaatctgaaagagaagttgaattaaagaaccggtttgaacaaact
atgaaagaggcagctgacaagtaccagggggcgaacttatacattaaaaatttggatgat
agcattgttgatgataagcttaaggagctgtttgcttcatttggcacaatcacatcatgc
aaggtcatgcgcgaccccaatggtataagcagaggatctggatttgttgcattctcaaca
cccgaagaggcttcttgggctcttatggagatgaatggcaaaatggttgttagcaaaccg
ttgtatgtagcacttgcacagcggaaggaagatagaagagccagattgcaggctcaattc
tctcaaatacggccagtttcgatggctgcttcagttgcccctcggatgccaatgtatccc
ccgggtggtccaggtatcggacagcagttgttttatggtcaaggtcctcctgcaatgatt
ccttcccaaggcggctttggttatcagcagcagcttgttcctggtataaggcccggtgga
ggtccaatgccgaatttctttgtcccaatggttcagcagggtcagcaaggccagcgccct
ggtggcagacgtgcaggagctgtccagcaaaaccagcagcctgttccaatgatgcaacaa
cagatgttgcctagaggagggcgtgtctaccgctatcccccaggaagaggtatgcctgat
gttcctatgcctggtgttgctggaggcatgttttctgttccatatgaaatgggaggcatg
ccaatgccattgcgtgatgcggcacattctcaacccatccctataggtgctctggcttct
gctctggcaaatgctactccagaccaacagagaacgatgctgggggagaatctgtacccg
ctcgtggaacagttggagcccgacaatgcagccaaggtaactggaatgcttctggagatg
gaccagactgaggttttgcatttactcgagtccccggaggctttgaaggcgaaagtagct
gaggctatggaggttttgaggaatgtagctgcagcccagcagcagcaagctgggaacaca
gctgatcagctagcctctctgtcgctgacagagaacctcgtgtcgtga
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