Cucurbita maxima (winter squash): 111483208
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Entry
111483208 CDS
T05246
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
cmax
Cucurbita maxima (winter squash)
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cmax03009
]
111483208
Ribosome biogenesis [BR:
cmax03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
111483208
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
NBCH_WD40
WDR55
Beta-prop_Vps41
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_NWD2_C
PQQ
PEP5_VPS11_N
Beta-prop_WDR11_1st
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
111483208
NCBI-ProteinID:
XP_022985124
UniProt:
A0A6J1JCF3
LinkDB
All DBs
Position
Unknown
AA seq
438 aa
AA seq
DB search
MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITA
SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP
AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT
SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD
GLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHDAA
VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV
RRGSHGRAMKSESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML
ELILKEAKAGYNQKEIQR
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgccattttctccacaagaagttgtcctggccagctctcctgatggccccattgttgcc
tatgatgcctccacaggcacccctctagccagtttcaacgatagccattcgcctcgccgt
ggtatcacccgagctgggcggagttccatcgccgtctcccacatctgcccgatcactgct
tcgggttcaatccacatttataattggtggaattcatctgccttccagagtatcactgta
cctgaacctgttgctcctctcacagccactcctgatggtttttatctgtttgctggtggc
ctttcaggatgcattcatacgctctctcttccatctggggatgttctcaactctttaccc
gcacacaggaaatcagtttcttgccttgaacttagcgctgatgggtcacttctcatatca
ggtggggatgatggcacgattgttgtcatcccaatctttcaacttgttcaagccaaacca
caggaaaatgcaaccaaacacattctacatcagttttcagcacataatgattcagtgact
tccatttactctgtcatggggatgtccagttcccaaatagtctcaagctcaatggatggc
agatgcaagttctggagcttgctctcaggaacagtcttgcacaccgtggtgttcccttgt
gccattttcagtgtggtcttagatccatcagaaacagagtttttcgctgcaggatctgat
gggttggtgtacaagggctcattgagacataacatcaaacaccttataagcacagattct
gaactaactccaccagcatccgacaacttggcgtacaggtgctcattgaggcataaaaac
aaacaccttatgggcacaagctctgaactaatttcatggtcgccaaagcacgacgctgca
gttgtatctatagtcataatcaacgaaggaaataacttaatatctgcagcagaagatggg
aacatctgggtctggcaagtgaacaaggggcaggtgataatgaccctcgaaaatgagatg
ggaagcataagcgatttggtgattgccacagaaaaaaggcatgaaaaagaacgaaatgtc
agaaggggcagccatggaagagcaatgaaaagtgagagctctagattacccagtcccatg
ttggggttattgataaatcaaacagctgagatgcaaggcgcggtggcggcgggcggaagc
gacgtgagaagagccattgagttgctggaatctgccatcgctatgtatgagaagatgttg
gagctaatcttgaaggaagccaaagcaggctacaatcaaaaggaaatacaaagatga
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