Cucurbita maxima (winter squash): 111484381
Help
Entry
111484381 CDS
T05246
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111484381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111484381
03012 Translation factors [BR:
cmax03012
]
111484381
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111484381
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111484381
Translation factors [BR:
cmax03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111484381
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
NACHT
T2SSE
ABC_tran
Dicer_dimer
NPHP3_N
Myosin_head
Motif
Other DBs
NCBI-GeneID:
111484381
NCBI-ProteinID:
XP_022987076
UniProt:
A0A6J1JD40
LinkDB
All DBs
Position
Unknown
AA seq
1162 aa
AA seq
DB search
MKDRTPSSNGAVYVPPHLRLRSVVTRSDRSSAVSAVDCKLREAPASLLDSGTIPPPCLDS
RSQELLSMGKSRFNSVHYDFACDDGAPVDSWGFSPPANIDLWKRKLALLLRDKEKQELVS
REKKDRHDFEQIAALASRMGLFSHLYAKVAVISKVPLPNYRFDLDDRRPQREVSLPPGLL
RRVDEHLGEFLSQKSRFKCFQDNSVSRSSSSGSIATDEGLFEQPELQASSKAVMEKILWR
RSLHLRDQQHAWQSSLEGREMLEFRKNLPAYKEKDALLTTISQNQVIIISGETGCGKTTQ
VPQFILESEIESLRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKG
RDTHLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRL
ILMSATLDAELFSSYFGGAQIIYIPGFTHPVKTHFLEDILEMTGYRLTPYNQIDDYGPEK
TWKMSKQAPRKRKTQIASTVQDALMAADFNEYSLQTRESLSCWNPDCLGFNLIEFLLVSI
CESEMPGAILVFMTGWDDISSLKEKLQSHPLLGDPTRVMLLACHGSMASSEQRLIFTEPD
KGVRKVVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRG
RAGRVQPGECYHLYPRSVFDSFFEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQS
PELLAVQNAIEYLKIIGAFDESENLTVLGRYLTMLPMEPKLGKMLIIGSIFNCLDPILSI
VAGFSVRDPFLTPLEKKDAAEAAKSQFSRDHSDHLAIIRAYEGWKEAERNFGGYDFCWKN
FLSVQSMKAIDSLRKEFFSLLRDTGLVDEHSNTYNAWSLDERLIRAVICCGLYPGVCSIV
HNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAISDSMLL
LFGGSISKGDQEGHLKMLGGFLEFFMKPDVAETYQKLRTELEELIQMKLLNPTMDLHSHH
ELLSALRLLISEDQCEGRFIFGRQILQQPSKKSTLAAAPNSVSRIESGPGGDNSKSQLQT
LLTRAGYAAPIYKTKQLKNNHFQATVEFNGLQIMGQPCTNKKNAEKDAAARALEWLMGGN
QIGQDCINQMSMMLKRSKKDHN
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaccgtactccttcctccaatggcgccgtttacgtccctcctcacctccgtctc
cgttccgtcgttactcgttctgatcgttcctctgctgtttccgctgttgactgcaagctt
agggaggctccagcctcgctgctcgattccggaaccattcctccgccttgccttgattct
cgatctcaggaactcctctcgatggggaaatcgcgttttaattccgtgcactatgatttt
gcctgcgacgatggggctccagtggatagctggggtttttcacctcctgctaacattgat
ttgtggaaaaggaagttagcactacttttacgtgacaaggagaagcaagagttagtttca
agggagaaaaaagatagacatgattttgagcaaatagctgctttggcaagtagaatggga
ctttttagccatctatatgccaaagttgctgttattagtaaggtcccgttgccgaactac
agatttgatttggatgatcggcgtccacagagggaggtttctttgcctcctgggttgctt
agaagagttgatgaacatctgggagaatttctctctcaaaagtctcggtttaaatgtttt
caagataactccgtctctagatcaagcagcagtggtagcattgctacagatgaagggctt
tttgagcaacctgagctacaagcatctagtaaggctgtgatggaaaaaattctttggcgg
agaagtttgcatctgcgtgatcaacagcatgcttggcagtcatctctagaaggaagagaa
atgctggaattccggaaaaatctccctgcttacaaggagaaggatgcattattgaccaca
atctcacagaatcaggttattattatttcaggtgaaactggttgtggcaagactacgcaa
gttccccaattcattttggaatcagaaatagaatcactccgtggtgctgtttgcagcatc
atatgtacacagccaagacgaatatctgctatgtctgtctctgagagagttgcttctgaa
agaggcgagaagttgggtgaatctgttggttataaagtgcggctggagggtatgaaaggg
agggatactcatcttctcttttgcaccaccggcatcttgttgagaagactgctggttgat
agaaatttgaaaggcgtaactcatgttattgttgatgaaattcatgagcgtggaatgaat
gaagattttctgcttattgtcctgaaagatctccttcctcgtcgaccagaattgaggttg
attctaatgagcgcaactttagatgcagaacttttctcatcctactttggtggggctcaa
ataatttacattccgggattcacacaccctgtcaaaactcattttctggaggatattcta
gaaatgacgggttacagattaactccatacaatcaaatagatgattatggtccagagaag
acttggaaaatgagcaaacaagcaccaagaaagaggaaaacccagattgcctctactgtt
caggatgcacttatggcagctgattttaacgagtacagtcttcaaactcgggagtcttta
tcgtgttggaatccagactgtcttggatttaatctcatagaatttcttctagtcagtata
tgtgagagtgaaatgcctggagctattcttgtttttatgactgggtgggatgacatcagt
tctctgaaggagaaacttcagtctcaccctttattaggagatccaactcgggtcatgttg
ttggcatgccatggctctatggccagttcagagcagaggttaatatttactgaacctgac
aaaggagtgaggaaggtagtgcttgcaacaaatattgctgagacaagtatcacgataaat
gatgttgtgtttgttctggattgtggaaaggcaaaagaaacatcatatgatgctttaaac
aacactccttgtttgcttccctcttggatatccaaggtttctgctcaacaaagaagagga
agggctggtcgtgttcaacctggagaatgttatcatctataccctaggtctgtgtttgat
tcttttttcgaatatcagctacccgaaattttgagaacacctttacagtccctctgcttg
caaataaaaagcctaaagcttggaagtatatcagagtttctatctagggctttgcagtcg
ccagagctactagcggttcagaatgctattgaatatttaaagatcattggagcatttgat
gagagtgaaaatcttactgtcttaggtcgttatttgactatgctcccaatggaaccaaaa
ttgggaaagatgttgataataggttctatcttcaattgtttggatccaattttgtccatt
gttgctggcttcagtgtgagagacccttttctaacaccacttgagaagaaggatgctgca
gaggctgcgaagtcccaattttcacgagatcatagtgatcaccttgctattatccgggct
tatgagggatggaaagaagctgagaggaactttggtggttacgacttctgttggaagaac
ttcctttctgtacaatcgatgaaggctattgattcattaaggaaggagtttttctctttg
cttagagatactggtttagttgatgagcactcgaacacgtacaatgcttggagtctagat
gaacgactcatacgtgcagttatttgctgtggcctctatcctggagtttgctccattgtg
cataatgagaagtcattttctctcaaaaccatggaggatggccaggtacttctctattcg
aactcagtcaatgctcgagagtcgaggattccatatccatggatagttttcaatgagaag
ataaaagtgaactccattttccttcgagattcaacagctatctctgactcaatgctgctt
ctctttggtggaagcatctcaaaaggtgatcaagagggacacttgaaaatgttgggcggt
tttttggaattttttatgaaacctgatgttgcagagacgtatcagaaattaagaacggaa
cttgaagagcttatacagatgaagctactaaatcctacgatggacttgcactcccaccat
gagctcctatctgctctacgcttgcttatttcagaagaccagtgtgaaggtcgatttatt
tttggccggcagatccttcagcaaccctccaagaaatcaactctcgcagcagcaccaaat
tctgtttcaagaattgaaagtggacctggtggtgacaactctaagagtcagctgcagact
ttactcacgagggctggatatgctgcacccatctataagacaaagcaattgaagaataat
catttccaagcaaccgttgaatttaatggactgcaaattatgggacaaccttgtaccaac
aaaaagaatgcagaaaaggatgcagcagctagggctctcgagtggctaatgggtggaaat
cagattgggcaagactgtatcaaccaaatgtctatgatgctaaaaagaagcaagaaggat
cataactaa
DBGET
integrated database retrieval system
