Cucurbita maxima (winter squash): 111484450
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Entry
111484450 CDS
T05246
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111484450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111484450
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111484450
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111484450
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
111484450
NCBI-ProteinID:
XP_022986819
UniProt:
A0A6J1JH57
LinkDB
All DBs
Position
Unknown
AA seq
575 aa
AA seq
DB search
MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM
SGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG
ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNMV
SGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG
NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL
SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF
SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTTSY
HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFKSMSGVNQSFRDQGLK
SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD
EPAKGDPDFNVPQCYLIKPPPTLHVRFFTFHISPF
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtttacttaattcatctcttaatggatcagcttcgaatgttccagatggagct
gggcgatcttttgctacctcattttctggtcaatctggcgcagcctcccctgtttttcat
cactctggaactatgcaagggttgcataacattcatggaagcttcaatattcagaacatg
tcaggtgcactagctttgagaaattcaacgattaataatgttccatctggtggggtgcag
caacctactggaacactttccagtgggcgttatgctgcatcaaacaaccttcctgttgct
ctctcacagttgtctcatggcggctctcatgggcatttaggagttgcaaatagaggaggt
ataagtgttgtaggaaatcctggatttagtagcagcacaaatgcagttggtggttctatc
cctgggattctgtctagttctgctggtattggtaatcgaaatactgttccagggttgggt
gtatctccaattttgggaaattcaggtcctcggatcacaagttcaatgggaaatatggta
agtggaggcaacataggaaggagtataacttctggtgggggattgtcattacctggtctt
tcttctcgtctaaaccttggtgctaatagtggatctggaagtttatctgtgcaaggacaa
aaccgtttaatgagtggtgtgcttccacaaggatctcaacaggtcatttctatgttgggt
aattcttatcctagcgccggaggtcccctttcccaaaatcatatgcagagcgtgaatagt
ctcagttctctggggatgttgaatgatgtgaatgctaatgacaattctccttttgatatc
aacgatttccctcagttgactagtcgtccaagttctgcaggagggcctcaagggcaatta
agctcgctgagaaaacaaggccttagtcctattgtccaacaaaaccaggagttcagcatt
cagaatgaagattttccagcgttacctagatttaaaggtgggaatgctgattatggcatg
gatatgcatcagacagaacaacatgaaaattctgtgcctatgatgcagtcgcagcagttc
tctattggaaggtctgctggatttagcttagggagtacatatacacatcgaccccagcag
cagcaacagcattcttcagcagttagtaacagcacggtctccttttcacctgcaaataat
caagatctccttcatttgcacggatcagatatatttccgtcatcacatactacatcctac
caccagcagtctagtggccctcctggtattggtttaagacctatgagctctcctaattca
gcttctggaatgggttatgaccaacttatccagcaatatcaacagcaccacggtcaatct
caattccgattcaaaagtatgtctggtgttaatcagtcatttagggatcagggccttaaa
tctatgcagacagctcaatcttctcccgatccatttggtttacttggtttgttaagtgta
ataaggctgagtgatcctgatctagcatccctcgcactggggattgatttgaccacgtta
ggtttaaatttgaattcagcagagaatcttcataagacatttggctccccatggtctgat
gagcctgctaagggtgatccagatttcaatgtaccgcagtgctatcttattaaaccaccg
cctacactacatgtgaggttcttcacctttcatatatcccccttctag
DBGET
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