Cucurbita maxima (winter squash): 111484880
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Entry
111484880 CDS
T05246
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111484880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111484880
03012 Translation factors [BR:
cmax03012
]
111484880
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111484880
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111484880
Translation factors [BR:
cmax03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111484880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
111484880
NCBI-ProteinID:
XP_022987282
UniProt:
A0A6J1J9Y1
LinkDB
All DBs
Position
Unknown
AA seq
1211 aa
AA seq
DB search
MPYSTFFNAYIRTSMSLSLRTTSSAPFCTASTRFRPWFPHLFTRNLSMGFVNLQCRPGSV
TGIRCTSQSKWIEVALREKQQEHVRGFKQRNLAFPFLQHQSCSNYGRFAYDDVSSDDSDV
EFGSPHGQMHSSTLDNVDEWKWKLTMLLRNNDELEVVSREKKDRRDFDQLSALATRMGLH
SRQYAKVVVFSKYPLPNYRPDLDDKRPQREVVLPFGVQTEVEGHLRLYQSSHHSVTRGRF
SNSYLPKSGIAENCANNYGVFEHQEPSTTQSLVMEKILRRKSLQMRNQQQDWQESLEGQK
MMEFRKSLPAFKARETLLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSI
ICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGVKGRDTRLLFCTTGVLLRRLLVD
RNLKGVTHVIVDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFCSYFGGAP
TMHIPGFTYPVRAHFLENILEMTGYRLTPYNQIDDYGQEKAWKMQKQAQALKKRKTQIAS
SVEDAFEASNFLAYSPRTQESLSCWNPDSIGFNLIEHVLSYIVKGERAGAILVFMTGWDD
INSLKDQLQSHPLLGDPSRVLILACHGSMTSSEQKLIFDKPEDGVRKIVLATNMAETSIT
INDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCV
YDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSNALQPPEPLSVQNAIDYLKTIGA
LDEKENLTVLGQHLSVLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPYDKKD
LAESAKAQFAARDCSDHLALVRAYEGWRDAERQQSGYEYCWRNFLSMQTLRAIDSLRKQF
FFLLKDAGLVDFDAEKCNNLKPDGHLIRAVICAGLFPGICSVVNKEKSVALKTMEDGQVM
LYLNSVNAGYSKIPYPWLVFNEKVKVNSVFLRDSTGVSDSILLLFGGHVSRGGLDGHLKM
LDGYLEFFMKPALAETYLSLKTELDELVHQKLLNPKLDMQPHNELLSAIRLLVSEDRCEG
RFVFGRHVPVPSKKAMNDGSPRQKNGDGAGGDNSKSQLQTVLLRAGHDAPTYKTKQLKNN
QFRSTVIFNGLNFVGQPCGSKKLAEKDAAAEALLWLQGETQSSSQAIDHASLLLKRSKRK
NDRTSRSAKWS
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcaaccttcttcaacgcctatatcaggacctccatgtccctctccctcaga
accacttcatcggctccgttctgcacagcttcgacgcgcttcaggccttggtttcctcac
cttttcacccggaacctgtccatggggtttgtcaacttgcagtgccgtccaggttccgtc
actggcattcgttgtacgagccaatccaagtggattgaagttgcgttgagggagaaacag
caggagcatgtgaggggttttaagcagaggaatcttgcgtttccgtttttgcagcatcag
tcctgctccaattatggtcggtttgcgtatgatgatgtgtctagtgatgattctgatgtc
gaatttgggtctccgcatgggcaaatgcattcatcaacccttgataacgtagatgagtgg
aaatggaagttaactatgcttctacggaacaatgacgaactagaagtagtgtcaagggag
aaaaaggatagacgtgattttgatcaactttcagcattggcaaccagaatgggtttgcat
agccgtcaatatgcaaaagttgttgtatttagtaaataccctctgccgaattacaggcca
gacctggatgataagcgaccacagagggaggtggtcttaccttttggggtccaaacggaa
gttgaaggccatctaagattgtatcaatcttctcaccattctgtgacaagaggacgtttc
tcaaatagttacttgccaaaatctggcattgctgaaaattgtgctaacaactatggagtg
tttgagcaccaggaaccttcaacaacacaaagtcttgtcatggagaaaattcttcgccgc
aaaagtttgcaaatgaggaatcaacagcaagattggcaggaatctcttgagggccaaaaa
atgatggaatttcgcaaaagtctcccagcatttaaagcgagggaaacattgttaaaggcc
atttcagagaatcaggtagttgttgtctctggtgaaactggttgtgggaaaaccacgcag
cttcctcagtatatattagaatctgagattgaagctgctcgtggagcttcttgtagtatt
atctgtactcagcctagacgtatttctgccatgtctgtttctgaaagagttgctgcagaa
cgtggagagaaactgggagagtctgttggttataaagttcgtctggagggtgtaaaagga
agggacactcgtcttctcttttgcaccactggtgtactattgagaagattgcttgttgac
agaaatttgaaaggtgtaactcatgttattgttgatgagattcatgaacgtggaatgaat
gaagattttcttgtgattgtcctgaaagatcttcttcctcgacggccagatttgaggttg
atcttaatgagtgcaactctaaatgcagaacttttttgttcttattttgggggtgctcca
acaatgcatattcctggttttacatacccagttcgtgcacactttttggagaatattcta
gagatgactggctatcgattgactccatataatcaaattgatgattatggtcaagaaaag
gcatggaaaatgcaaaaacaagctcaagctctaaagaaaaggaagactcagattgcttca
tctgttgaggatgcatttgaggcgtctaactttttagcatacagtcctcgaactcaggag
tccctatcctgttggaatcctgactcaattggtttcaacctcattgagcatgtcctttct
tacattgtcaagggggagagggcaggtgctatactagtttttatgaccggatgggatgat
ataaactctttaaaagaccagctccagtcacatcctttattaggggatcctagcagagtt
ttgatccttgcatgtcatggttcgatgaccagctctgagcagaaattgatatttgataaa
cctgaagatggagttaggaaaatagtcctagctacgaacatggcagagactagtatcacc
atcaatgacgtggtttttgttgttgactgtggaaaagcaaaggagacatcctatgatgct
ttaaataacactccttgtttgcttccatcctggatctccaaggctgctgctcgacaaaga
agaggtagggctggtcgtgttcaacctggtgaatgttaccatctctatcccagatgcgtg
tatgatgcttttgctgattatcaactgccagaacttttaaggaccccgttacagtctttg
tgtttgcaaatcaagagtctgcaacttggaagtatatcagagttcctatcaaatgcattg
cagccgccagagcctttatcagttcaaaatgccatagactatttgaagacaattggagct
ctagatgagaaagaaaatctgacagttcttgggcaacacttatcagttcttccagttgag
cctaaactgggaaaaatgcttatattaggagctattttcaactgtcttgatcccattatg
actattgttgctggtcttagtgttagagatcctttccttatgccatacgataaaaaggat
ttagccgagtcagcaaaagcacagtttgctgcacgtgattgcagtgatcatcttgcctta
gttcgagcttatgagggttggagagatgccgaaagacagcaatctggttatgagtactgt
tggagaaactttctctccatgcaaactctcagagccatcgactctctgaggaagcagttc
ttctttttgctgaaggacgctggtctagttgattttgatgcagaaaaatgcaacaacttg
aagcccgatgggcacttaatccgtgcagtcatctgtgctggtttgtttcctggaatttgc
tctgttgtgaacaaagagaaatcagtagctttgaagacaatggaagatggtcaggttatg
ctatacttgaactcggttaatgctggctattcaaaaatcccctacccatggctggtgttt
aatgaaaaggtgaaagtcaactcagtctttcttcgggattctaccggggtttctgactct
atccttcttttatttggaggacatgtttcgagaggaggacttgatggtcacctcaaaatg
ctggatggttatttggagtttttcatgaaacctgcattggccgagacttatttgagtctt
aaaacggagcttgatgagcttgttcatcaaaagcttttgaatccaaagttagatatgcag
ccacacaatgaactactatcagcaataaggttgttggtatcggaggatcgctgtgagggt
aggtttgtctttggtcgtcacgtgcctgtaccatcaaaaaaagcgatgaacgacggttca
cctcgacagaaaaatggcgatggagctgggggcgataattccaagagtcagcttcagacc
gtactcctgagagctggacatgatgcaccaacttacaaaaccaagcaactaaaaaacaac
caattccgatccactgttatcttcaacggattgaacttcgttggccaaccatgtggcagc
aagaaacttgcagaaaaagatgcagctgctgaggctctactatggctacaaggcgagaca
cagtcgtcttcccaagctatcgatcatgcttccttacttcttaaaaggagcaaaaggaaa
aacgatagaacatctcgtagtgccaaatggagttaa
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integrated database retrieval system
