Cucurbita maxima (winter squash): 111485001
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Entry
111485001 CDS
T05246
Name
(RefSeq) endoribonuclease Dicer homolog 2 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cmax
Cucurbita maxima (winter squash)
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmax03036
]
111485001
Chromosome and associated proteins [BR:
cmax03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111485001
microRNA pathway
RISC loading complex
111485001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Helicase_C
DEAD
PAZ
Dicer_dimer
ResIII
Cas3-like_C_2
SNF2-rel_dom
SWI2_SNF2
dsrm
AAA_22
Helicase_C_2
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
111485001
NCBI-ProteinID:
XP_022987458
UniProt:
A0A6J1JJH9
LinkDB
All DBs
Position
Unknown
AA seq
1392 aa
AA seq
DB search
MASYMELESEQLVADPIPFARSYQLEGLEKALKQNTIVFLETGSGKTLIAIMLLRSFAHQ
LRKPSPFFAVFLVPQVVLVTQQAEALKMHTNLSVGLYYGDMGVDFWDGEVWKQEIDKHEV
LVMTPAILLNCLRHSFIQLSMIKVLIIDECHHARGKHPYACIMSEFYHRQLPLDKSNLPR
VFGMTASPIKSKGGNSELMCWQHIQDLESLLNSKVYTCSGESELAKFVPISTPKFKFYMH
KDIPYALYEQLAEGLKVLKLKHERSLENPDLNPSKVEPTRKRISKAFLALMYCLDELGLW
LAWKAAESLSWMEDDFSPWETLDIFGEAIVKSFFSDALTLLASPFKSGCSYQFIGDNVEA
DMAAGLMTAKVVCLIESLLEYRSVEDIRCLVFVERIVTAVALQTLLSVLLPKHTCWKAKY
IAGRNSGLQTQTKKKQNEIVEEFRCGKVNIIVATSILEEGLDIQSCNLVIRFDPSSTVSS
FIQSRGRARMQNSDYILMVKSGDSATLSRLQRYLDSGEIMRNESLRHASLPCLPFRSDYN
EESYRVESTGAVVTLSSSVGLIYFYCSRLPSDCYFKPTPRWNPETRTLQLPKSSPCQIFS
SKDDAKYPKQSACLEACKQLHKYGALTDNLVPDMVAEEAVAQGVGNKPLDEEQPIYVPPE
LVHCSPNNSSGVYHCYLIELKQNFNYDISVHNIVLAMRTELEFEVQSMCHDMDVDRGSLD
VNFKYIGIIKLSPEQVLLCRRFQATIFRVLLKHKWDIELSKNDEICLGDSPKVDYLLLPS
TGVGLISWETVLSALDSSIKYCVHRGISSFKGFAYDVQTQNGLDCICRLENSLVYTPHNS
HVYCITGALSALDGNSLLKLRKNETMLTYKEYYKMHHGIDLQHEKQPLLCGKKIFTVHNH
LQKCRKREEGVSSNSLVELPPELCSIIMSPISINTLYSYSFLPSIMHRLESMLIASNLKR
LNSDHCMQNDIPTVKVLEAITTKSCQEKFHLESLETLGDSFLKYATGQHLFKAFQKDHEG
LLSLKKDRIVCNAALCKLGCEHKISGFIRDEAFDPQKWAIPGDTHEVHQLTEEVLSNGRK
VYVRRKRKVKGKRIADVVEALIGAYLSTGGERAAIQFLNRIGIEVYFDIVPYERPFSVDA
HKLINVRHLEFLLNYTFNDPSLLLEAMTHGSYMFQEIPRCYQRLEFLGDSVLDYVVTVHL
FNKYPGMSPGLLTDMRSASVNNDCYARTAVKAQLYKSILHLSHDLHKHISSTLKNFEMLS
SEATYGWESETSLPKVFGDVIESLAGAIYVDSGYNKDKVFESIRPLLEPLISPETVKMHP
RRELNEVCQKKNYNLKKTVTSRVNGKTHVTVEVEANGRIFKHTAISLDKETGKKVASKEV
LKSLKDFYGPLL
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtatatggagttagagagcgagcagctagtggctgatccaataccatttgcc
agaagttatcagttggaaggattggaaaaagcacttaaacagaacacgatagtgtttttg
gaaactggatctggcaagactttgatagccatcatgcttttgagaagctttgctcatcag
ctgcgcaaaccttcacctttctttgctgttttcttagttccacaagttgttttggtcact
caacaagctgaagctctgaagatgcataccaacttgagcgttggcttgtattatggagat
atgggtgtagacttttgggatggtgaagtttggaagcaagaaatagataaacatgaggtg
cttgtgatgactcctgcaattttgctaaattgcttgaggcatagcttcattcagctaagc
atgataaaggtcttaataatagatgaatgccatcatgccagaggcaaacacccttatgct
tgtattatgtcagagttctatcaccggcagctacctcttgataaatctaatcttcctaga
gtatttggaatgactgcttctccaataaagtcaaagggtggcaactcggaattaatgtgt
tggcaacatatacaagaccttgagtccttattgaactcgaaggtgtatacttgttctggt
gaatctgagctggccaagtttgtacctatttcaactccgaagttcaaattttatatgcac
aaggacatcccatatgcattatatgaacaattagcagagggtttgaaggttttgaaatta
aagcatgaacgctctctggagaatccagatctcaacccttccaaggtagaaccgactaga
aaacggatatcaaaagctttcttggctttgatgtattgcttagatgaacttggtctttgg
ttagcctggaaggctgctgagtctttatcatggatggaagatgatttttctccttgggaa
acgttggatatatttggtgaggcaatagtgaaaagtttcttttctgatgccttaacgcta
cttgctagtccatttaaatcaggatgttcctatcagtttataggtgataatgttgaggct
gatatggctgcaggtcttatgactgcaaaagttgtttgtctcattgaatcgctacttgaa
tacaggtctgtcgaggatataagatgtttagtatttgtagaaagaatcgttactgctgtg
gcccttcaaacactattgagcgtattgctcccaaaacacacttgctggaaggccaaatat
atagctggaaggaactcgggattgcaaacccagacaaagaagaaacaaaatgaaattgtg
gaagaatttcgttgcggcaaggtcaacatcattgttgcaacctcgattctagaagagggt
ttggatatccaaagttgcaatttggtaattagatttgacccgtcatccacagtaagtagc
ttcatacaatctagaggacgtgctaggatgcaaaactcagattacatcttgatggtaaag
agtggggattctgccactctctctcgacttcaaagatatcttgatagtggtgaaattatg
agaaacgaatctctacgccatgcctctcttccgtgcttaccttttagaagtgattacaat
gaggaatcctatcgtgttgaaagcactggtgcggttgtgactctaagttccagtgttggt
ttgatatacttctattgctctcgccttccttctgattgttattttaagccaacaccacga
tggaatccagaaactcgcaccttgcaacttcctaagagctctccttgtcagatcttttcc
agtaaagatgacgctaaatatcccaagcaaagtgcctgtttagaagcatgcaaacaactt
cataagtatggtgctttgacagataatcttgtccctgatatggttgctgaagaagctgtg
gcacaaggagttgggaataaaccacttgatgaagaacaaccaatttatgttccaccagaa
cttgtgcattgtagtcccaataattctagtggagtgtatcattgctacctgattgaatta
aagcagaacttcaattatgatatatcagttcataacatcgtgctagccatgagaaccgag
cttgagttcgaagtccaaagcatgtgtcatgacatggacgttgacagaggaagcttggat
gtgaattttaaatacataggcattattaagcttagcccagagcaggttcttttatgtaga
aggttccaagctacaattttcagagtcttgttgaagcataaatgggatatcgagttgagt
aaaaatgacgagatttgcttgggagatagtccgaaggttgattatcttctgctcccttca
actggtgtaggactgattagctgggagaccgttctgtctgcattagattcatccataaaa
tattgtgtacatcgtggtatttcctcattcaagggctttgcttacgacgttcaaacccaa
aacggacttgattgcatttgcagactcgagaattctttggtgtatactcctcacaacagt
catgtatattgcataacgggtgctttgagtgccctcgatggaaactcattactcaagctt
cgaaaaaacgaaacgatgctgacttacaaggagtattataaaatgcatcatggcattgac
ttacagcatgagaaacaaccattactttgtgggaaaaaaatatttacagtgcataatcac
cttcagaaatgtagaaaacgcgaggagggagtatcaagtaattcgctagttgaactacct
cctgaactttgttctataataatgtctcccatatccatcaacaccttatattcgtattca
tttcttccttctattatgcatcgactcgaatcgatgctcattgccagcaacttgaaaagg
ttgaattcggatcattgcatgcaaaatgatattccaaccgtgaaggtcttggaagcaata
acaacaaaaagctgccaagagaaatttcatctagaatccctcgagactcttggcgattca
tttcttaaatatgcgactggtcaacatctttttaaagcttttcagaaagatcatgagggc
cttcttagtctaaagaaagatagaatagtttgtaatgctgctctctgtaagcttggatgt
gaacacaaaatttcgggctttattcgagacgaggctttcgatcctcaaaagtgggctatt
cctggtgatacacatgaagttcaccaattaacagaggaagtgctttctaatgggagaaaa
gtttatgttcggagaaaaagaaaggtaaaaggtaagaggatagctgacgttgttgaggcg
ctaatcggtgcatatcttagcactggtggggaaagggcagctattcagtttctaaatcgg
atcggtatagaagtgtattttgatattgtaccttacgagagaccttttagcgtcgatgcg
cacaagctcattaatgtcagacatttagagttcctgctgaattacacgttcaatgatccc
tcattgttgttagaagcaatgactcatggttcatatatgtttcaagaaattccaagatgt
tatcagcgactggaatttcttggagactcggtattagattacgtcgttactgtgcatttg
ttcaacaaatatcccggaatgtcaccgggattgttgactgacatgaggtctgcgtccgtg
aacaacgattgttatgcacgaactgcagtaaaggctcagctgtacaaaagtattctgcat
ttgtctcatgatctccacaagcatattagttcgacccttaaaaacttcgagatgttgtct
tctgaagcaacgtacggatgggaatctgagacttctttacccaaggtttttggagatgtc
attgaatctttagctggagcaatatatgtagactccggatacaataaagataaggtgttc
gagagtatacgtccacttttagaaccgttaatatcgcccgaaacggtgaagatgcatcca
agaagagagttaaatgaggtatgccaaaagaagaactacaacttaaaaaaaactgttact
tctcgtgtgaatggaaaaacacacgttacagttgaggttgaagccaatgggaggatattc
aaacatacagcaatctctttggataaggagactggaaagaaggttgcttccaaagaagtt
ctcaaatctctaaaggacttctatggtcctctcctatag
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integrated database retrieval system
