KEGG   Cucurbita maxima (winter squash): 111485231
Entry
111485231         CDS       T05246                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
cmax  Cucurbita maxima (winter squash)
Pathway
cmax03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmax00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111485231
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmax03019]
    111485231
Messenger RNA biogenesis [BR:cmax03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     111485231
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd EIF3I WDR55 ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_DCAF12 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st NBCH_WD40 WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_Vps41 Beta-prop_SPT8 eIF2A Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Cytochrom_D1 Beta-prop_WDR75_2nd Ge1_WD40 Beta-prop_IFT140_1st Nbas_N CFAP43_N Beta-prop_WDR11_1st WD40_like Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 111485231
NCBI-ProteinID: XP_022987787
UniProt: A0A6J1JBB4
LinkDB
Position
Unknown
AA seq 320 aa
MKLAGLKSVENAHEESVWAATWIPATDNRPSLLVTGSLDETVKLWKSDELDLDRTNTGHC
LGVVSVAAHPSGYIAASASLDSFVRIFEVDSNSTIATLEAPPSEVWQMRFNPEGTMLAVA
GGGSASIKIWDTSTWKLAATLSIPRPEGPKPTDKTASKKFVLSVAWSVDGRRLACGSMDG
TISVFDVARAKFLHHLEGHFMPVRSLVYSPVEPRLLFSASDDAHVHMYDAEGKTLIGAMS
GHSSWVLSVDASPDGAAVATGSSDRTVRLWDLNMRTAVQTMTNHSDQVWGVAFRPPGAGV
RSGRLASVSDDKSISLYDYS
NT seq 963 nt   +upstreamnt  +downstreamnt
atgaaactcgccggtctcaaatccgttgagaacgctcacgaagagtctgtatgggcggcg
acttggattccggccaccgacaatcgcccttccctccttgtcactggctccctcgacgag
accgtcaagctctggaagtctgatgaactcgacttggaccgcaccaacactggtcactgc
ctcggcgttgtttctgttgctgctcatccttccggttacattgctgcctctgcttccctc
gacagctttgttcgcatctttgaggtcgattccaactccactatcgccactcttgaggcg
ccgccttctgaggtctggcaaatgcgcttcaatcccgagggtaccatgttagcagttgct
ggtggaggtagcgcatcaattaagatttgggacacaagcacgtggaagctggctgcaact
ctatccattcctcgcccagaaggacctaagcccactgataaaactgctagcaagaagttt
gtactttcagtagcatggagcgttgatgggaggagacttgcatgcggttcaatggatgga
accatttcagtctttgatgtagctcgcgcaaagtttctacaccacttggaaggccacttc
atgccagtgagatcccttgtgtattcgcctgttgagccacggctactcttttcagcctcc
gacgatgctcatgtgcacatgtatgatgcggaagggaaaactctgattggagccatgtcc
ggccattcaagctgggtattgagcgttgatgcaagccctgatggtgctgctgttgcaaca
ggctctagcgacagaactgttaggctttgggatctcaacatgaggactgccgttcagaca
atgactaaccatagtgatcaggtctggggggttgcgtttcgaccacctggtgctggcgtg
cggtctggtcgacttgctagtgtgtctgatgacaagagcatctccctttatgattattct
tga

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