Cucurbita maxima (winter squash): 111486098
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Entry
111486098 CDS
T05246
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111486098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111486098
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111486098
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
111486098
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
BAG6
Motif
Other DBs
NCBI-GeneID:
111486098
NCBI-ProteinID:
XP_022988876
UniProt:
A0A6J1JIH0
LinkDB
All DBs
Position
Unknown
AA seq
286 aa
AA seq
DB search
MKGLSVGEKLFIEGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV
KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVSLERCLLGGKSGAGA
GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN
EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHCHVC
GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgaaggggctttcggttggagaaaagcttttcatagaaggtggtattgctcaggatctt
cgtaccgatggtcgaaggagactaacttatcgacccatttccgtagaaacggatgtgatc
tctcaggcgaatggttcagcaagggtcagaatgggtggtaccgaggttattgctactgtc
aaggctgaacttggaaggcccaatgcaatgcagcctgataaagggaaggtttccatattt
gttgattgcagcccgactgcagagccaacgtttgagggtaggggtggtgaagagttggca
acagaactctcggtttcccttgagcgatgcctcttagggggaaaaagtggtgcaggggct
gggattgacctttcgtctctgatagttgtggaagggaagctttgctgggatctttatatt
gagggccttgttgtaagctcagacggaaatcttctagatgcccttggtgctgcgattaag
gctgctttgagcaatacaggcataccaaaagtcaatgtttctgcagaagcatcggccaat
gaacaacccgaagttgacgtaagcgacgaagaatttctacagttcgacacgtctggggtt
ccggtcatagttacgttgacaaaggtgggtaggcactacattgtggatgctactttggaa
gaggaatctcaaatgagctctgcaatctccatatctgtcaacaggcactgtcatgtctgt
gggttgaccaaacgagggggtgctggggtcgatccaagcgtaatccttgacatgatatcc
gtgggcaaacatgtgagcgagcaattattaaacaagttggattcggagatagctgctgct
gaagctgatgaagaagaatga
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