Cucurbita maxima (winter squash): 111487196
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Entry
111487196 CDS
T05246
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03015
mRNA surveillance pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111487196
09123 Folding, sorting and degradation
03018 RNA degradation
111487196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111487196
03041 Spliceosome [BR:
cmax03041
]
111487196
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111487196
mRNA cycle factors
Stress granule specific factors
111487196
Spliceosome [BR:
cmax03041
]
Complex C
Other components
Complex C specific factors
111487196
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_RdRP1_2
RRM_7
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
111487196
NCBI-ProteinID:
XP_022990267
UniProt:
A0A6J1JI74
LinkDB
All DBs
Position
Unknown
AA seq
656 aa
AA seq
DB search
MKTPVTAPATVATVQTAAIPPTDSVATGGGFLNSSLYVGDLDPTVNEGQLLELFSQVAQV
VSIRVCRDQTRRRSLGYAYVNFSNHQEASSALEHLNFTLINGKPIRIMMSNRNPSIRKSG
QANVFIKNLDASIDNKALYDTFATFGTILSCKVAIDSNGQSKGYGFVQFENEEAANIAIV
RLNGMLLNDKQVFVGHFIRRQERIQANGSTVTNVYVKNLLETTTADDLKNLFATHGAITS
AAVMTDSNRKSKCFGFVNFQSPDSAAAAVETLNGTVLGDDKVLYVARAQKKAEREAELKA
KFVQERKSRFEKLQGANLYIKNLDDQIDDEKLKELFSEYGTITSCKVMLDQNGLSKGSGF
VAFSSPDEATRALNELNGKMKGRKPLYVAVAQHKEERKARLQAQFAQARAAGAISSLPSG
IPGFHPGAPRLAPQQLYYGQGNPGLVPSQPAGYGFQPQLMTGMRPGMGPNFIMPYQFQRQ
GQPGPRPGMRRGGNSQPFNKQQQSLLRGTGQGFSYMNNVRNGLKPPVLPPVLPQALVGPV
MPLTFDTSGVSSSPIDIQRSRVVPSSTLASALASASPENQRMMLGEQLYPLVECLEPGHA
AKVTGMLLEMDQPEVLHLIESPDDLNSKVAEAMEVLHKASFEPELSDQLGALALAK
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactccagttacggcaccggcgactgttgctacagttcaaacggcggcgattcct
ccgactgactctgtcgccactggaggcggattcttgaattcttcattgtatgttggcgat
ctggacccgactgtgaacgagggacagcttttggaactgtttagccaagtggctcaggtt
gtctccattagggtttgcagggatcagacacgcaggcgatcgcttggatacgcttatgtt
aatttcagcaatcatcaggaagcttccagcgccttggaacatttgaatttcaccctcatt
aatgggaagcctatcaggattatgatgtcgaatcgaaatcctagcatccgaaaaagtggc
caagcaaatgttttcatcaaaaatctggacgcatcaattgataacaaggcattgtatgat
acatttgctaccttcggtactattctttcgtgtaaagttgccattgatagcaatggtcaa
tcaaaagggtatggatttgtgcaatttgaaaatgaggaagctgcaaacattgctatagtt
agattgaatggcatgctgctcaatgataagcaagtttttgttggacattttattcgacgt
caggaaaggattcaggcaaatggatcgacagttactaatgtttatgtgaagaatttactg
gaaactaccacagctgatgacctaaaaaatctttttgctacacatggtgccattactagt
gcagctgtcatgacagattcgaacaggaagtccaaatgttttggctttgtgaatttccag
agcccagactctgctgctgctgcagttgaaacgttgaatggtaccgtccttggtgatgac
aaggttctgtatgtagccagggctcagaagaaagcagaaagggaggccgagttgaaagca
aaatttgtacaggaacgaaagagtagatttgaaaaattacaaggtgctaatttgtatata
aaaaaccttgatgaccaaattgatgatgagaagctcaaagagttattctctgagtatgga
acaatcacatcatgcaaggttatgcttgaccaaaatggactgagcaagggatctggtttt
gtagcattttcttcaccagatgaagcaacgagagccttgaatgaattgaatggaaaaatg
aagggaaggaaacctctgtatgtggctgttgcccagcacaaagaagagagaaaggctcgg
ctccaggctcaatttgctcaagccagagcagctggcgcaatatcgtctttgccttcagga
attccagggtttcatccaggtgcaccacgacttgcacctcagcagctgtattatggtcag
ggaaatcccgggctggtgccctcacagcctgctggatacggcttccagcctcaactcatg
accggaatgcgacctggtatgggtccaaacttcatcatgccttaccagtttcagaggcaa
ggacagcccgggccacgtcctgggatgaggcgaggtggaaattcgcaaccatttaataag
cagcagcagtcactgctccgtggcactggacaaggttttagttacatgaacaatgtacgg
aatggattaaagccacccgtcctgccccctgttctgcctcaagctcttgttggtccagtg
atgcctctgacttttgatacttctggagtgtctagctcccccattgacatccaacgatca
agggttgtgccttcatcaacactcgcttctgcattagcctctgcttcacccgaaaaccaa
cgtatgatgctcggcgagcagttgtatccacttgtggaatgtctcgagccaggtcatgca
gcaaaggttactggaatgttgctggaaatggaccaaccagaggtccttcatctcatcgag
tcaccagatgacttgaatagtaaggtggctgaggcaatggaagtcctccacaaagcttcc
ttcgaacccgagctatctgatcagctcggtgcattggccctggccaaatga
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