Cucurbita maxima (winter squash): 111487514
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Entry
111487514 CDS
T05246
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111487514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111487514
03012 Translation factors [BR:
cmax03012
]
111487514
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111487514
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111487514
Translation factors [BR:
cmax03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111487514
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
nSTAND3
AAA_22
AAA_19
ATPase
AAA_16
T2SSE
PhoH
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
111487514
NCBI-ProteinID:
XP_022991095
UniProt:
A0A6J1JRX3
LinkDB
All DBs
Position
Unknown
AA seq
1144 aa
AA seq
DB search
MHNFKRLPNVLLVLSKNINCDLSNKYGLAVRPLKLLLQSHSYSVSRVWRGSYHYAAEQFS
DDEYECDVENNTASSSVANIDEWKWKLSLLSRNEKDQEIISRDNRDKRDFEQISNLAKKM
GLYCSMYGKVVVASKVPLPNYRPDLDDKRPQREVAIPLSLQRRVEGLLEEHCDRIRLSSA
KASEISNDAKSIDEVKDVNTDEYENSYLDESVMEKVLQRRSLRMRNMQRAWQESPEGRKI
LDFRRSLPAFKEKERLLQAIAQNQVVVISGETGCGKTTQLPQYLLESEIETGRGAFCSII
CTQPRRISAMAVSERVSIERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDR
NLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSSYFGGAPT
IHIPGFTFPVRAYFLEDVLEVTGYKLTSFNQIDDYGQEKTWKTQKQLVPRKRKNQITTLV
EDALDKSTLGNYSSNTRDSLSSWMPDCIGFNLIEAVLCHICRKERPGAVLVFLTGWEDIS
SLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQRLIFEKPPQNVRKVVLATNMAEASITIN
DVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGKCYHLYPKCVFA
AFSEYQLPELLRTPLNSLCLQIKSLQVPSVGEFLSSALQPPEPLAVQNAIGFLKMIGAFD
EKENLSNLGKFLSMLPVDPKLGKMLVMGAIFHCFDPILTIVSGLSVRDPFLLPQDKKDLA
GTAKARFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSAQTLQAIDSLRRQFSF
ILKDAGIVELDGSTSNKLSHNQSLVRAIICSGLFPGVASVVHRETSMSFKTMDDGQVLLY
ANSVNARYDTIPFPWLVFGEKVKVNTVFLRDSTGISDSMLILFGGAVKCGVQAGHLKMLN
GYIEFFMDSSLAECYLQLKEELDKLIENKLQNPGLDILKEGKYLVLSVQELVSGDQCEGR
FVFGRESRKQVSTDDKFTRDGSNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKG
MQFVGKPKKNKQLAERDAAIEALAWLTHTSDNNTNSDDDSPIDVTDNMLKLLGKRRRSKG
RPGY
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgcataatttcaagcgacttccaaatgttctattagtattatcgaagaacatcaactgt
gacctgtctaacaagtacggtctcgctgtgaggccacttaaactgcttctacagtctcat
tcgtattctgtttcccgagtctggcgaggttcgtatcattatgctgcggagcaattctcg
gacgatgagtacgagtgcgacgttgagaacaatacggcctcatcttctgtggccaacatc
gatgagtggaaatggaaacttagcttgctatctcgaaatgagaaggatcaagagatcatc
tcaagagataacagggacaagagagactttgagcagatctcaaaccttgccaaaaagatg
gggctctactgttcaatgtatggaaaagtggttgttgccagtaaagttccccttcctaac
taccgaccagatttggatgataaacgaccacaaagagaggttgctattcctttaagtttg
caaaggagggttgaaggtttactagaggaacattgtgatcgcattcggttaagttctgca
aaggctagtgagatttcaaatgatgccaagtctattgacgaggttaaagatgttaacacg
gatgaatatgaaaattcttatcttgatgagtctgtgatggaaaaggtacttcagcggagg
agtttacggatgcgaaatatgcaaagagcatggcaggaatcacctgaagggaggaagata
ctggatttcaggagatctctgccagcattcaaggagaaggaaaggctactccaggcaata
gcacaaaatcaggtagtagttatatctggagaaactggatgcggtaagactacacaactt
cctcagtacctactagaatcagaaatcgaaactggtcgaggagctttctgtagcataata
tgcactcagccccgaagaatctctgctatggctgtttccgaaagagtatccatagagcga
ggagaaccccttggtgaaacagttggctataaagttcgattagaaggtatgaaagggaaa
aacacccatctcttgttttgcaccagtggtatattacttcggaggcttctaagtgaccgt
aatctaaatgggattacccatgtctttgtggatgaaattcacgagcgaggcatgaatgaa
gattttctgttgattgtcttgaaggatctacttccacgccgccgggatttaagattagtc
ttgatgagtgccaccttaaatgctgaacttttttccagttattttggaggagcaccaact
attcatatcccaggttttacatttccagtgagggcatactttttggaagatgtgttagaa
gtaactggctataagttgacatctttcaaccaaattgatgattatggccaagagaaaacg
tggaaaacacagaaacaattagttccacgaaaaaggaaaaaccaaatcactactcttgtt
gaggatgctcttgataaatcaaccctgggaaattacagttcaaacacacgagattctctc
tcatcctggatgcctgattgcataggttttaatcttattgaggctgttttgtgccacata
tgtcgtaaggagcgacctggtgcagttttggtattcctgactggatgggaggatattagc
agtttgagggatcaactgaaagctcatccacttttaggagatccaaacagggttttgctt
ttgacgtgccatggttcaatggcaacatctgaacagagactcatatttgagaaacctcct
cagaacgtccgcaaagtagttcttgccactaatatggcagaggcaagcatcacaataaat
gatgttgtttttgttattgactgtggaaaggcaaaagaaaccacgtatgatgcgttaaac
aatacaccttgtctattaccttcatggatatcacaggcatctgctcggcaaagaagggga
cgggctggccgtgttcaacctggaaaatgttatcatctttacccaaaatgtgtttttgca
gcattttctgagtatcaacttcctgaacttttgagaactccactgaattccctctgcctt
caaataaaaagtctgcaggttccgagtgtaggagaattcttgtcatctgctctacagcca
ccagagcccttggctgtacaaaatgccattggttttctaaagatgattggggcatttgat
gagaaggaaaacttgtcaaatctcggaaaatttttgtcaatgcttcccgttgaccctaag
ctaggaaaaatgctggttatgggtgctatcttccattgctttgatcctatccttactata
gtttccggccttagtgtcagagatccttttcttctgcctcaggacaaaaaagatttagct
gggacagccaaggctagattttctgcaaaggactacagtgatcatatggcacttgttcgt
gcttacgagggatggaaagatgcagaaagagaagggtcatcctatgagtactgctggagg
aactttctctctgcccaaacacttcaggcaattgattcccttagaagacagtttagcttc
attctaaaggatgcaggaatagttgagttagatggtagcacgagcaataagttaagccat
aaccagtctcttgttcgtgcaatcatttgttctggtctctttcctggcgtagcatctgtt
gtgcacagagagacttccatgtctttcaaaaccatggatgatggccaggtcttactatat
gcgaattctgtaaatgcgcgttatgatacaattcccttcccatggctggtattcggcgag
aaagtgaaggtcaacacggttttcttacgagattccactggcatatctgattcgatgctg
attctttttggtggagcagtgaaatgtggtgtacaggctggtcatttgaaaatgttgaat
ggctacattgaattctttatggattctagtttggcggaatgctatttgcaactcaaagaa
gaacttgataagcttattgaaaacaaacttcagaatccggggctcgatattctcaaggaa
ggcaagtatcttgttctttctgttcaagagttggtgtccggtgaccaatgtgaagggaga
tttgtcttcggtcgggaaagtaggaagcaagtgtctaccgacgacaaattcacaagggat
ggctccaacccaaagagcttgctacaaaccttgctaatgagggcaggacattctcctcca
aaatacaaaaccaaacacctcaaaacaaatgagttcagggcgctggtagagtttaaggga
atgcaatttgtcgggaagcctaagaaaaacaagcagcttgcagagagggatgctgccata
gaggctctagcttggttgacacacacctctgacaacaacactaattcagacgacgactct
cctattgatgtaactgataacatgctaaaactccttggcaaacgaaggcggtctaaaggt
cgccctggttattga
DBGET
integrated database retrieval system
