Cucurbita maxima (winter squash): 111487845
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Entry
111487845 CDS
T05246
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03013
Nucleocytoplasmic transport
cmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111487845
09122 Translation
03013 Nucleocytoplasmic transport
111487845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111487845
03041 Spliceosome [BR:
cmax03041
]
111487845
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111487845
Spliceosome [BR:
cmax03041
]
Complex C
Other components
EJC/TREX
111487845
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111487845
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
FapA
LIM_bind
Motif
Other DBs
NCBI-GeneID:
111487845
NCBI-ProteinID:
XP_022991162
UniProt:
A0A6J1JL03
LinkDB
All DBs
Position
Unknown
AA seq
1886 aa
AA seq
DB search
MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALD
SVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLKLAKWLVESAFVPLRLFQERC
EEEFLWEAEMIKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCHVTDAS
NKNLPGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKSHASQILG
FKFQYYQRIEVNSPVPVGLYKLTALLVKEKFIDLDSIYAHLLPKEEEAFEHYESFSSKLL
DEANRIGKINLAATGKDLMDDEKQGDVSIDLFAALDMESEAVNGRSPELENNQTLGLLTG
FLSVGDWYHAHVLFNRLLPLNPVEHLPICNCLFRFIEESISSAYSIVRQHYYQSFGTSSG
ASIDTRNLPVGGSFIDLPRELFQMLAAAGPYLYRDPILLQKVCRVLRGYYMSAIEFVNSV
ESGSNPEFVLQAGSRVPHLHLKEARLKIVEALGMCILPSLQLIPANPAVGQGIWEVMNLL
PYEVRYRLYGEWEKDDEKIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANP
LTVLRTILHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLVQGGRDKLKDDGLNLS
DWLQSLASFWGHLCKKYPSMELRGLFQYLINQLKKGQGIELVLLQELVQQMANVQYTENL
TEEQLDAMAGSETLRYQATSFGVTRNNKALIKSSNRLRDSLLSKDEPKLAVPLLLLISQH
RSVVVINANAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPASAYAQLIPSLNELAQLYHL
DPEVAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVASNNSDSESAECSADVVLELGSSRK
PVRWSDLLDAVKSMLPPKAWNSLSPDLYTTFWGLTLYDLYVPQSRYESEIAKQHSALKAL
EELSDNSSSAINKRKKDKERIQESLDRLSNELNKHEENVASVRRRLSREKDKWLSSCPDT
LKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMIC
CCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIK
VHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIKSDE
REDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPSLASKSSASNLVASQSNSIYS
SQNEHGGGKPTAVPSSDSGNMAKDHSLRSRTSDMRTDKIDGFSVPKSELGHGKLKGTSLN
GPDSQPLVPSTSVHLGSLRVVEGQKPGDDLSRTSNEGSSKVIFKTSSESEQLRVSAKRNA
PAGILSKASKQDTTKDEIRSGKAASKNHGSSTSDRELPIHATDGGRHGTSYKTSSVMPND
YAQSSLTRGLSSSLKASDGHAIELKAESGVGRTSDSRASSLKENGSEALEVGKSSSSRLA
HSPRHDNSASGSRSSDKLPKRASPAEEPDRQGKRRKGDGESRDVDGDFRNPDKDKSIDTR
SVDADKIGMDEQSGYRGSDKPLDRTKDKVNERYDRDYKDRAERSEKSRGDDPSVEKTRDR
SIERYGRELSVDKVERVSDRYPDKSKDERDKDDRSKLRYNDTATEKSHVDDRIHRQSLPP
PPPLPPHMVPQSVNSGRREEDADRRFGNTRHSQRLSPRHEEKERRQSEENLISQDEAKRR
REEEFRERKREEREVGISLKVDDRERERERDKANLLKEDMDAAAASKRRKLKREHLSLAE
AGEYSPVGAPPSLVGGGVSQSYDGRERGDRKGVMMQRASYLDDPGLRIHGKEVVNKMTRR
EADLMYDREWDDDKRMRADQKRRHRK
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
atggctctccctcctcttgagtgtatgtatgtcgttgaaagcaatcttcgcgaatggaag
tccggaaactcgagctttagggttcccaaccctgtccctgtgcttcgcttcctttacgag
ctttgctggaccatggttcgaggtgaattgccgttccagaagtgtaaagcagcattggat
tcagtagagttcacggacaaaatgtctgcggaggagttaggatcgagttttgctgatgtc
attacccaattggcccaagatatcacattacccggagagtatcgtgttcgtcttttaaaa
ttggctaaatggctggttgaatctgcatttgtcccattgaggctttttcaagaacggtgt
gaggaagaatttttatgggaggctgaaatgataaagattaaggcgcaggaattgaaaagc
aaagaggtcagagtaaatactcgtcttctttatcagcaaacaaagtttaatcttctgcgt
gaagaaagcgagggctatgccaagttggtaacacttctttgccatgtcactgacgcttca
aataagaatttgccgggttcaacaattggtattataaagtcattgattgggcattttgat
ttggacccaaaccgcgtgtttgacattgtcttggagtgttttgaacttcagccagaaaat
agtgtttttgtggagctaattccaatatttcccaagtctcatgcttcacaaatccttggg
ttcaaattccaatattatcagcgcattgaagtgaactcgccagtgccagttgggctttat
aaacttacagctttactagtgaaggaaaaatttattgatctggatagcatatatgcacat
ctacttcctaaggaggaggaggcatttgagcattatgagtccttttcttccaaactactt
gatgaggctaacagaataggtaaaataaatcttgcggcaacgggaaaagatctaatggat
gatgagaagcaaggagatgtaagcattgatctttttgctgctcttgatatggaaagtgag
gcagtcaatggaaggtctccagagctggaaaataatcaaacattgggcttgcttacagga
tttctttctgtgggtgactggtatcatgcacatgtactgtttaatcggcttttacctctc
aatccagtggaacaccttccaatctgtaactgtttgtttaggttcattgaagaatcgatc
tcctctgcgtactctattgttcgtcaacattattatcagagctttgggacctcttcagga
gctagcattgataccaggaatttgccggttggtggttcttttatagatcttccgagggaa
ctttttcagatgcttgcagctgctggaccttatctctaccgtgatccaattttgctgcag
aaggtctgtagggtgctgcgaggttattatatgtcggcaattgagtttgtcaacagtgtg
gaaagtggttcgaatcctgaatttgttctgcaagctggtagccgggttcctcatcttcac
ttgaaggaagctagattgaaaattgtggaagctttaggaatgtgtatacttccttcgtta
cagttgatacctgccaatccagctgttggtcaaggaatatgggaagtaatgaatcttctt
ccgtatgaggtgcggtatcggttatatggtgaatgggagaaagatgatgagaagattcca
atggttttggctgcaaggcaaactgcaaagttggacacacggaggattttgaagcggttg
gctaaggaaaatttgaagcaattgggtaggatggttgcaaaacttgctcatgccaatccc
ttgactgtccttcgcacaatattacaccagattgaggcatatagggatatgattactcct
gtagtagatgcattcaagtatctgactcagcttgagtatgacatattagaatatgttgtg
attgaacgtttggtgcaaggagggcgtgataagttgaaggatgatggccttaatttgtca
gattggctccagtcattagcttcgttttggggtcacctgtgtaagaagtacccatctatg
gagctaaggggtttgtttcagtatctcattaatcagttgaaaaaaggtcaaggaattgaa
cttgttctcctgcaggaacttgttcaacaaatggccaatgtccaatacacagaaaaccta
actgaggaacagttggatgctatggcaggaagtgagacacttcgttatcaagcaacttct
tttggggttactcgaaataacaaggcgttgatcaagtcaagcaacagactgcgtgactcc
ttgctttctaaggatgaaccaaaattggcagtccctctcttgctacttatttctcaacac
cgttcagtggttgtcataaatgcaaatgctccttatattaagatggtcagtgaacaattt
gatagatgtcatggaactctgcttcaatacgtggaatttcttagtagtgcagttacgcct
gcatcagcttatgctcagttgattccctctctcaatgagcttgcccagctttatcaccta
gatcccgaggttgctttcctgatatatcgaccaataatgagattatttaagtgtcaaggt
ggttcagatatcttctggccactggatggcaatgatgcaaatgttgcaagcaataattct
gattcggaatcagcagaatgttctgcagacgttgttttggaacttggttcttcacggaaa
cctgtgaggtggtcagatctcctcgatgctgtaaagtctatgttacctccaaaggcttgg
aatagcttgtctccagatctctatactacattttggggtctcacgctctatgatctttat
gttcctcagagtagatatgaatctgaaattgctaagcagcattctgctcttaaagcttta
gaagagctttctgataactcaagttctgcaatcaataaaaggaagaaagacaaagaaaga
attcaagaatctcttgatcgcttgtccaatgaactaaataagcatgaagaaaatgttgcc
tccgtacgcaggcgactttctcgtgaaaaggataaatggttgagctcctgccctgatacc
ttgaaaattaacatggagttccttcagcgatgtatttttccccgctgtacattcagtatg
cctgatgctgtctattgtgctatgtttgtgcacactcttcattcccttggaacaccattt
tttaatacagtcaaccatattgatgttttgatatgtaaaaccttgcaacccatgatatgc
tgctgcacggaatacgaagcaggcaggcttggaaggtttttatatgagacactaaagata
gcttattattggaagagtgatgaatccatttatgaacgtgaatgtggaaatatgcctgga
ttcgccgtctattataggtatccaaacagtcaaagagtaacgtatggccagttcatcaag
gttcattggaagtggagtcaaagaattacacgattactcatacaatgcttggaatctaca
gagtacatggaaattagaaatgctcttataatgttgacaaaaatttccaacgtttttccc
gtcactagaaagagcggaatcaaccttgagaaaagggtcgctaagatcaaaagtgatgaa
agagaagatctgaaggtgttagcaactggtgttgccgcagctttggctgctagaaagcct
tcatgggttacagatgaagaatttggcatgggttatcttgaattaaagactgcaccttct
cttgcatcaaagtcttcagctagtaatttagttgccagccaaagtaattccatttattct
tcccaaaatgaacatggtggaggaaagcctactgccgtcccaagttcagattctggaaat
atggccaaagaccattcattgaggtcacgaacttccgacatgaggacggataaaatagat
ggtttttctgttccaaaatctgaactagggcatgggaaactcaaaggcacttcattgaac
ggaccagattcccagccacttgtgccctcaacttctgtgcatttaggatcgttaagagtt
gttgaaggtcaaaaaccaggtgatgacttaagtaggacatcgaatgaaggctcatcaaaa
gttattttcaagacctcttctgaatccgagcagttaagagtttcagcaaaacgaaacgca
cctgctgggattcttagtaaagcatcaaaacaagataccacgaaagatgagattagatct
ggaaaagctgctagcaagaatcatgggtcttccacaagtgatcgggagcttccaattcat
gcaacagacggtggtaggcatggaacttcttataaaacttcttcagttatgccaaatgac
tatgcgcaaagttcattaactagaggcttgtcctcatcattaaaagcttcagatggtcac
gctattgaattgaaggcagagagtggagtagggaggacttctgatagtagggcttcgtca
ctaaaggaaaatggtagtgaagctcttgaagttggaaaatcctcttcttccagacttgct
cattctcccagacatgataattctgctagtggttctaggtctagtgataaactgcctaaa
agagctagtcctgcagaagaaccagacagacaaggtaaacgtcggaaaggagatggtgaa
agtagagatgtagatggggattttcgtaaccctgacaaagataaatccatagacacacga
tctgtagatgctgataaaataggaatggatgaacaaagtgggtacagaggttcagataaa
cctctggatagaacaaaagataaggtaaatgaaagatacgatagggactacaaagatcgg
gcagagcgttctgaaaaatcccgtggagatgatccatcagtagaaaaaacaagagacaga
tcaatagaaagatatggaagagaactctcggttgataaagtggaaagagtttctgatagg
tatcctgacaaatctaaggatgaaagagataaagatgataggagtaagttacgatataat
gatacagctacagaaaagtctcatgttgatgatcggatccacagacagagcttgcctcct
ccccctcccttgcctcctcacatggtccctcaatctgttaatagtgggagaagagaagaa
gatgcagatagaaggtttggaaatactagacacagtcaaaggctttctcctagacacgaa
gagaaggaacggagacaatcagaggaaaatttaatttcacaggatgaagcaaaacgcaga
agagaggaggaatttcgagaaaggaagagagaagagagagaggtggggatttcattgaag
gtggatgacagggagagggaaagggagagggacaaggcaaaccttttgaaggaggacatg
gatgctgctgctgcctccaagaggcgaaaacttaaaagggagcatctgtcattggcagag
gctggtgagtattctcctgttggcgcaccgccatctctggttggtggtggcgtatctcaa
tcttatgatggacgagaaagaggagacaggaagggtgtaatgatgcaacgtgccagttac
ttggatgatccaggcttgagaattcatggtaaagaagttgtcaacaagatgaccagacgt
gaagccgatttaatgtacgatcgggaatgggatgatgataaaagaatgagggcggaccaa
aagcggaggcaccggaaataa
DBGET
integrated database retrieval system
