Cucurbita maxima (winter squash): 111487851
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Entry
111487851 CDS
T05246
Name
(RefSeq) DNA repair protein RAD4 isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
111487851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmax03400
]
111487851
DNA repair and recombination proteins [BR:
cmax03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
111487851
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
DUF4047
Motif
Other DBs
NCBI-GeneID:
111487851
NCBI-ProteinID:
XP_022991175
UniProt:
A0A6J1JS54
LinkDB
All DBs
Position
Unknown
AA seq
969 aa
AA seq
DB search
MRGRKQSQRPKKSSGVEDAGEAVPDPGGGCSQSSDGRGTLVDVSRAAVGKLLSRATGRRL
SGTKKHALQPCDLVGKPKCKDGRDVNSIMDTKEMLETEKSNENVIANSSGDVNVHEAQLQ
NSASHVLEDLDDSDWEDGAAGTMDGTGSYPMTIEFSETQHDSIRRKPIRRASAADKEIAE
LVHKVHLLCLLGRGRLIDRACNDPLIQSALLSLLPIHLLKNTPAKQLTASSLKPLVAWLH
NNFHVRNQIRSEGSINSALARALETHEGTAEEIAALTVVLLRALDLTARFVSILDVASIK
PEAERSNYFSEGTSVSSSNIFKNSTLMVDKAEQVDRSSLTSTSGGNCESNAINLSGKKTF
VLDELSCTTSSGGNSKPDISETCPSKNSQVLKRKGDIEFEMQLQMALSATEVETAPRNSS
TNYSNVPSSKFPSPKKLKRIVDEESASSSRGISTAVGSSKVGSPLYWAEVYCNAENLTGK
WVHVDAVNMVVDGEHKVEDLAAACKTSLRYVVAFSGLGAKDVTRRYCMKWYKIEKKRIDT
LWWDSVLSPLRTLEARATEGTGFLENGCIDDLMEHNKVKMPGLSESLKQNSFANDGNLPG
NSDHNVSEELDTDRNSSLGKQFVATKDYLEDIELETRALTEPLPTNQQAYKNHRLYALEK
WLTKYQTLHPKGPVLGFCSGHPVYPRTCVQMLQTKQKWLREGLQVKSNELPAKELKRSLK
KIKVQESETDDFDQGDSQGVIQLYGKWQLEPLQLPRAINGVVPKNERGQVDVWSEKCLPP
GTVHIRLPRVFNVAKKLEIDYAPAMVGFEFRNGRSYPIYDGIVVCSKFKRVILEAYAEES
ERREAEERRQREKQAISRWYQLLSSILTRQRLNSRYGDDENPSQQVVTEIRGTNDKGNVD
IPSCKDDTEPVECQLQQNNVSNANMDAPSFVNEEDHKHVFLLEDQTFDEKSLVVTKRCHC
GFSVQVEEL
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggccgaaaacagtcacagcgccccaaaaaatcttcaggtgtagaagatgctggt
gaggcagtaccagatccaggaggaggctgttcacagtccagtgatggcagaggaacttta
gtcgatgtttcaagggctgctgtgggcaagcttcttagtcgtgcaactggacgtcgcttg
tcaggaacaaagaaacatgctctgcagccatgtgatttggtcggaaagccaaagtgtaaa
gatggaagagatgtaaattcaattatggacacgaaggagatgttagagactgagaagtcc
aatgagaatgtaatagcaaactcctccggggatgttaatgttcatgaagcacaattgcag
aattctgcttcgcatgttttggaagacttggatgattcagattgggaagatggtgctgct
ggcactatggatggaacagggtcttatccaatgaccattgaatttagtgagacgcagcat
gactctataaggaggaagcctattcgtcgagcttctgctgctgataaggaaattgcggag
ttagtgcataaggttcatttgctttgcttacttggacggggaagattaattgacagagct
tgcaatgatcctcttattcagtctgctttgctttctctacttccaatacacttgctgaag
aacacaccggccaagcaactgactgccagctctctgaaacccctggttgcttggttacac
aacaattttcatgttagaaaccaaataaggtcggagggttctattaattctgctctagct
cgtgctcttgaaacgcatgaagggactgcagaggagattgctgcattgaccgtggtgctt
ttaagagctttggatctaacggcccggtttgtatccattttggatgttgcttctataaaa
ccagaggctgagagatctaactattttagcgaagggactagtgtatcaagtagtaacatt
ttcaagaactcaactttgatggtcgataaagcagaacaggttgatagaagttctcttaca
tctacttctggtggtaattgtgaaagcaatgcaatcaatttatcaggaaagaaaactttt
gtccttgatgagttgtcttgtaccacaagttctggcggcaactcaaaacccgatatctcc
gaaacctgcccttctaagaactctcaggtactgaagaggaagggggatattgagtttgaa
atgcagttacaaatggctctttcagctacagaagttgagactgcgcctagaaattctagc
acaaattactcaaacgtgccttcttcaaagttcccttcaccaaaaaaactgaaaagaatt
gttgatgaagaatctgcctcttcttcccgtggaatctccactgctgttggttcaagtaaa
gtaggatcgcccttgtattgggcagaagtatactgcaatgcagaaaacttgacgggtaag
tgggtacacgttgatgctgtaaatatggttgttgatggggagcacaaagtagaggattta
gctgctgcatgcaaaacatctttgagatatgtggttgccttttctgggcttggtgctaaa
gatgtgactcgcagatattgtatgaagtggtacaagatagaaaaaaaacggattgatact
ctttggtgggacagtgtattgtcaccattaaggacacttgaagcacgagccacggagggt
actggtttcttggagaatggctgcattgatgacttgatggaacacaataaagtaaaaatg
ccaggtttatcagaaagtttgaagcagaattcttttgcgaatgatggtaacttgccgggg
aattcagatcacaatgtgtcagaagagcttgacactgaccgaaactcttctttgggtaaa
caatttgttgctacaaaggattatctggaggatattgaattagaaactcgggctctcact
gaacctcttccaacaaatcagcaggcctacaaaaaccaccgtttatatgcccttgaaaaa
tggcttactaagtatcagacgcttcatccaaagggccctgttctgggtttttgttctgga
catccagtttaccctagaacatgtgtccaaatgcttcagacaaagcaaaagtggctgcgt
gaggggctgcaagttaaatccaatgaactacctgctaaggagttgaaacgttccttaaag
aaaatcaaagtacaagagtctgaaactgatgactttgatcagggtgattcccaaggagtc
attcaactctatgggaagtggcaattagagccattgcaattgcctcgtgctataaacggg
gttgtgccgaaaaatgagcgtggtcaagtggatgtgtggtctgaaaagtgccttccacca
ggaactgtgcatattagattgcccagggtattcaatgttgctaagaagctggaaattgat
tatgcacctgcaatggttggctttgaatttcgaaatggtcgatcatatcctatctatgac
ggcattgttgtctgttctaagtttaaacgtgtgatattagaggcatacgctgaggaatcc
gagagaagagaggctgaagagagaagacagagagaaaaacaagcaatttcaagatggtat
cagcttctttcatctattttgactcggcaaaggttgaacagtcgttatggggatgacgag
aatccatcacagcaggtggtgactgagattcggggcacgaacgacaagggaaatgtagat
attccttcttgtaaagacgatacagaaccggtcgagtgccagctccagcagaataatgta
agtaacgctaacatggatgctccatcttttgtcaatgaagaagatcataagcatgtgttc
ttgttagaggatcagacgtttgatgagaaaagtttggtagtgacaaaacgatgtcactgt
ggtttttctgttcaagtggaagaattatag
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