Cucurbita maxima (winter squash): 111488047
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Entry
111488047 CDS
T05246
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111488047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111488047
Enzymes [BR:
cmax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111488047
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111488047
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RRM_PARN_C
Motif
Other DBs
NCBI-GeneID:
111488047
NCBI-ProteinID:
XP_022991403
UniProt:
A0A6J1JW45
LinkDB
All DBs
Position
Unknown
AA seq
617 aa
AA seq
DB search
MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS
FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI
GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK
SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID
VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE
ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV
LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL
FAKACSVLKIDLGGVQSNNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISCR
HLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAIN
SDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPETE
RLDIYYSNDSIINLADL
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctcggttctcatctctccagttgcagagacgccgcctgcatattgccaccaat
caactaagcgttaggcaaattcgcaactccgacttctatggctgcttgggggacctgaag
aaccacatctccgactccgacttcatcgccctctctttgcagaacaccggctcttcttcc
tttccttggcaccgccttcagtccttcgacacctacgataccgcctattgcaaggccaag
tacgccgccgagaagtttcagatccttcaattcgctctatgccccttctctgttagggaa
tccaagctaatcgcccatccgtacaactttcatttgttccccagagatgatctgaacatt
gggatgccttcttacagtttttcatgtcaagtttcacatctaacatccatggctcatgaa
ggttttgactttgatgcttgcatatatgatggcatatcatacttatctagagctcaagag
tccatagcaaaagttcgaataggccgtccgattctaacacctagtacttatgatgtgaaa
tcttcttctagacagacaattgctgattcagtttttgttcaacgggttaaatcacgggta
aagaactggaaagatgcatgtaattcaagcacaaaaacaaatgacgctctgctaagttcg
ttgaaaaagctcatcattggcagcgaggagtatggatcaagaccatccatgactatagat
gtttgtagtgaacgtcaagttctacttgttttagagctgttgagtgagttttctgatgac
ctggttcctgtagtaattccaactaagggtggaggaactcaagcaattcgtgccatttgg
acaagctcaaaagaagacaagattctgcttgagaaggagcttcaaaatcttgaagaggaa
gaaaacaagaaatttcgtggttttcgagaggtggtagatatcatttctgcttcacagaag
cctatcgtctcctacaattctcttaatgattttgcatttgttcattctaaattccttgct
ccccttcctactggcatagatgagtttgcgtcctctttgcatttggttttcccgagagtg
ctcgatgtaaagcatttgatcagcaagatcggtggcctcagcaagccgaccagtatagct
tcagctctttcttacttgaagaatcattattttgcacctattgatttggacattccagtt
gaagctacaggaaatgatcgcaagtttcatgggcataacgctatactggtatgccatttg
tttgcaaaagcctgctctgtacttaaaattgatcttggtggcgtccaatccaacaattgt
ttggcctcaaagctggatgggtgtgcaaatgtttttggttcattctcccccgaccaccac
aaatctgaggatgaggacatcaagatctcgacgaagaacgttagaaagattagctgtagg
catttggttttcttgtggggatttagagacgggatgactgctcggtcgatgaaaactgca
cttgaaggatcccatgaagttttctgtgaagagtttgatgtccggttcgtggacaagaaa
tgcgccatcgtcgtattctggcaacctggcttatccgaggctttccttgatgcaataaac
agtgatggcattgtgggatgtttaaaagatatggtatctgaaggcctaaaagcaacaggt
tatgaaacttacaagagggtgtgtaggttgggtttatgggaagcagatttagcggagtcc
ctggagagagccacttcagaacaccatcattccagtttcgaagctgatcccgaaaccgag
cggttagatatctattactctaatgattctataattaatttggctgatctttga
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