Cucurbita maxima (winter squash): 111488949
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Entry
111488949 CDS
T05246
Name
(RefSeq) polyadenylate-binding protein 3-like
KO
K13126
polyadenylate-binding protein
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03015
mRNA surveillance pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111488949
09123 Folding, sorting and degradation
03018 RNA degradation
111488949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111488949
03041 Spliceosome [BR:
cmax03041
]
111488949
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111488949
mRNA cycle factors
Stress granule specific factors
111488949
Spliceosome [BR:
cmax03041
]
Complex C
Other components
Complex C specific factors
111488949
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_RdRP1_2
RRM_7
RBD_DEAH11
RRM_MARF1
RRM_3
Motif
Other DBs
NCBI-GeneID:
111488949
NCBI-ProteinID:
XP_022992674
UniProt:
A0A6J1JY61
LinkDB
All DBs
Position
Unknown
AA seq
649 aa
AA seq
DB search
MAAMIPAPVISAPIQTAVIPPPVGSVAPGEVFLSSSLYVGDLENNVNEAQLLELFSRVAQ
VVSIRVCRDQTRRLSLGYAYVNFSNHQEAIAAMEHLNFTSLNGKPIRIMISNRDPSIRKS
GYANVFIKNLDVSIDNKALHDTFASFGTVLSCKVAVDSNGQSKGYGFVQFVTKEAAESAI
LKLNGMLLNDKQVYVGQFIRRQERMRANGLLFTNVYVKNLPENMTEDGLKNLFGVHGTIT
SVIVRTDSNGKSKGFGFVNFENAASAADAVEKLNGTLIGEDKILYVGKAQRKAEREAELK
EKFERDRKIRFDKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDENGVSKGTG
FVAFSSPDDAARAINEMNRKMKGRKPLYVAVAQRKEERKAQLQFAHIRVASEISSLTSGM
PGFHPGAPRLAPQQLYYGQENPGLVPPPPGYSFQPQLMSGMRPSMGPNFIMPYQFQRQVQ
HGPRSGIRRGGNTQPVHQQQLMLRGAGQGYRYMNNARNGLEPLVLPQGLVGQMMPLGFDN
SGMSSPPIDIQRSRAVPTSTLASALASATPTHQRLMLGEQLYPLVERLELTHAAKVTGML
LEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPDLSDQLGSLVLTK
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcggctatgattccggcaccagtgatttctgctccgattcaaacggcggtcattcct
cctccggtgggctctgtggcccctggagaagtgtttttaagttcttcattgtatgtgggc
gatctggagaataacgtgaacgaggcacagcttttggaactgtttagccgtgtggctcag
gttgtctccattagggtttgcagggatcagacacgcaggctatcgcttggatatgcttat
gttaattttagcaatcatcaagaagctatcgctgccatggaacacttgaatttcacctct
cttaacgggaagcctatcaggattatgatctctaatcgagatcctagcattcggaaaagt
ggctatgcaaatgtttttatcaaaaatctggacgtatcaattgataacaaagcattgcat
gatacatttgcttctttcggtactgttctttcttgtaaagttgcggttgatagcaatggt
caatcaaaaggttatggatttgtgcaatttgttaccaaggaagcagccgaaagtgccata
ctaaagttgaatggcatgctcctcaatgacaagcaagtatatgttggccaattcattcga
cgccaggaaaggatgcgagcaaatggattactatttactaatgtttacgtaaaaaattta
ccagaaaatatgacggaagatggcctaaaaaatctgtttggtgtacatggtaccattact
agtgtaattgttaggaccgattcaaatggaaagtccaaaggttttggttttgtgaacttt
gagaacgcagcctctgctgctgatgcagttgaaaagctgaatggtaccctcattggtgag
gacaagattttgtacgtaggcaaggctcaaaggaaagcagaaagggaggctgaattgaaa
gaaaaattcgaacgggatagaaagattagatttgataaattacaaggcgcaaatttgtac
atcaaaaatcttgatgaccatattgatgatgagaagcttaaagaattattctctgagtat
ggaacaatcacatcatgcaaggttatgcttgacgaaaatggagtgagcaaggggactggt
tttgttgccttttcttcaccagatgatgcagctagagccataaatgaaatgaatagaaag
atgaaaggaaggaagcctctgtatgtggctgttgcccagcgcaaggaagaaagaaaggcc
cagctacagtttgctcatatccgagtagctagtgaaatatcatcactgacctcgggaatg
cccggatttcatccaggggcaccccgacttgctcctcagcagctgtattatggtcaggaa
aaccccggcctggtgcccccacctcctggatacagcttccagcctcaacttatgagcgga
atgcgacctagtatgggccccaacttcatcatgccttaccagtttcagagacaagtacag
catgggccacgctcggggatcaggcgtggtggaaatacacaacctgtacatcagcagcag
ttaatgctccgtggcgctggacaaggttatagatacatgaacaatgcaagaaatggatta
gagccgctggtcctcccccaaggtcttgttggtcaaatgatgcctctaggttttgataat
tctgggatgtctagcccaccaatcgacatccagcgatcaagggctgtgcctacttcaaca
ctcgcatctgcattagcttctgctacacctacacatcagcgtttgatgctcggcgagcag
ctgtatccactcgtagaacgtctcgagctaactcatgcggcaaaggttactggaatgttg
ctcgagatggaccagccagaggtgcttcatctcattgaatcacctgatgacttgaagagt
aaggtggctgaggcaatggaagtcctccgcaaagcttcgtcggaacccgacctctctgat
cagcttggttcgttggtgctgaccaaatga
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