Cucurbita maxima (winter squash): 111489130
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Entry
111489130 CDS
T05246
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03013
Nucleocytoplasmic transport
cmax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111489130
03015 mRNA surveillance pathway
111489130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111489130
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111489130
mRNA cycle factors
P-body specific factors
111489130
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
111489130
NCBI-ProteinID:
XP_022992950
UniProt:
A0A6J1JX56
LinkDB
All DBs
Position
Unknown
AA seq
1191 aa
AA seq
DB search
MDHHEDDGRSVSESQPKRDDEETAARQEEIKKSFEAKMALRQSNLNPERPDSGFLRTLDS
SIKRNTTIIKKLKQINDEQREGLMDELRNVNMSKFVSEAVSAICDAKLRASDIQAAVQIC
SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVVED
SAIFNNIIKDLTSIEHLRDRDTTLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT
ADQKKFFRKAFHTYYDAAAELLQSEHTSLRQMEQENAKLLNAKGELNDENVSSYEKLRKS
YDHLYRNVSSLAEAVDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA
FYECLPDLRAFVPAVLLGEAEPKANEQSAKPAENLAESEADQGQQTSLEAVEISTDSLLE
DGKINEKGKDKEEKDKEKNKDTDKEKGKEKDADRKMENEKEKLKNIEGTNLDALLQRLPG
CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRLVATLSTCMKDVSV
ILLQMLEEEFNFLLNKKDQMNIETKIKNIRFIGELCKFKIASAGLVFSCLKACLDDFTHH
NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP
ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK
YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN
YELVDSSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMVITLLQTCGHYFDRGSSKRK
LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV
SNVKPNTEKHLDAKKPSRATSNTTSANGRDTVNGSKENGAAHEDGVDSDSDTGSGTIEAE
GHGDEESDLENHEDGCDTEDDEDDEEAGGPASDEDDEVHVRPKVAEVDPREEANFEQELR
AVMQESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEALEEDAGGSKEV
QVKVLVKRGNKQQTKKMYIPRDSALLQSTKQKEAEELEEKQDIKRLILEYNDREEEELNG
LGSQTMNWMQTGNNRAPTRGNNWDASGGRSGGSHHPHHRYPGGGVHYSRKK
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggaccatcatgaagatgatggccgctcagtgagtgaaagtcagcccaagagggatgat
gaggaaactgctgctcgccaggaagaaattaaaaagtcatttgaagctaaaatggctcta
cgacaaagtaatctgaatccagagaggcctgactctggattccttagaacgttggattct
agtattaaacgcaacacaactattattaaaaagttaaagcagataaatgacgaacaacga
gaagggctgatggacgagttgcgtaatgtaaatatgagtaaatttgttagtgaagctgtt
tctgccatatgtgatgccaagcttagagcttctgatattcaagcagctgttcagatctgt
tcgcttcttcaccaaaggtacaaagacttctcaccgtgcctgattcaagggcttttaaaa
gtattctttcctggaaagtctggggatgagttggatgctgataggaacttgaaggccatg
aagaagcgcagcactctcaaacttctcttggaacttttttttgttggagttgtagaagac
agtgcaattttcaataatattattaaggatcttacaagtatcgaacatttgagggatcgg
gatactaccctaacaaacttgactctccttgctagctttgctcggcaagggagaatcctc
ttgggtctaccgcctactggacaagatcatgaggagttttttaagagcctcaatattact
gccgaccaaaagaaattcttcaggaaggcatttcatacatattatgatgcagcagcagaa
ttgcttcagtctgaacatacatcacttcgccaaatggagcaggaaaacgctaagctcttg
aatgcaaaaggagagcttaatgatgaaaatgtctcttcatatgagaagttacgaaaatct
tatgaccatttataccgaaatgtctcatccttagcagaagcagttgatatgcaaccccca
gtgatgccagaggatggccacacaaccagggtttctgcaggggaagatgtttcatcacct
gctgctggaaaagattcatctgtgcttgaagccatttgggatgatgaagacacccgggct
ttctatgaatgcttaccagatctcagggcatttgttccagcagtactattgggagaagcg
gagcctaaagcaaatgagcaatctgctaaaccagcagaaaatctggctgaatctgaagca
gaccaaggtcagcaaacttctctagaggccgttgagatttctacggattctttgctagag
gatggaaaaattaatgaaaaagggaaggacaaagaagaaaaagataaagaaaagaataag
gatacagacaaggagaaggggaaagaaaaagacgcagatagaaagatggaaaatgaaaaa
gaaaaacttaaaaatattgaaggaactaatttggatgctttgttgcagaggctccctggc
tgtgtcagccgtgaccttattgatcagttgactgtagagttttgttatttgaattccaag
gctaaccggaagaagcttgttcgagctttgtttaatgtacctaggacgtctttggagtta
ctgccttactactcacgcttggtcgcgacattgtcaacttgtatgaaggatgtatctgtc
attctcctccagatgttagaggaggagttcaactttttattgaacaaaaaggaccaaatg
aacattgaaacgaagataaaaaatattaggtttattggagagctctgcaagttcaaaatt
gcttcagctggccttgtttttagctgtttgaaggcatgtttagatgatttcactcaccac
aacattgatgttgcttgtaatcttcttgagacctgtggacgttttctttatcggtctcct
gaaactacagttcggatggctaacatgttggagatattgatgcgcttgaaaaatgtaaaa
aatttggatccccggcatagcaccctggtagaaaatgcatactatctttgcaagcctcca
gagagatctgcacgggtgtcaaaagttcgtccaccattgcatcagtatattagaaagtta
ctcttctcagatctggacaagtctgccattgagaatgtgttaaggcaacttcggaaactt
ccatggagcgaatgtgagcaataccttttaaaatgttttatgaaagttcacaaagggaag
tatggccagattcacttgattgcttctctaacgtctggtttgagtcgataccatgacgag
ttctcagttgctgttgttgatgaggtattggaagaaattaggcttggactcgaagtaaat
gattatgggatgcagcaaaagcgcattgcccatatgcggtttttgggggagttgtacaac
tatgaacttgtagattcatctgttgtttttgataccctttatttgattcttgtttttggg
catggcacatcagagcaagatgtattggatccaccggaggacactttccgcataaggatg
gttatcactcttcttcaaacctgtggtcactactttgatcgaggatcttcaaagaggaaa
cttgatcggttttttatacacttccagaaatatattctcagcaaaggcgcgcttccgttg
gatgttgagtttgacttacaggatttatttgcggaattgcaaccaaacatgaccagatac
tcatccattgaagagataaatgctgcttttgtagaactcgacgagcatgaacgttctgtc
tcgaatgtcaagcccaatactgagaaacacctcgatgccaaaaagcctagcagagcaact
tccaataccacctcagctaatggaagggacacggtgaatggctccaaggaaaatggtgca
gctcatgaagacggtgttgatagtgacagtgatacaggaagtggcactattgaggcagag
ggacatggtgatgaagagtcggacttggagaatcatgaagatggatgtgacactgaggat
gacgaagatgatgaagaagcgggtgggcctgcttctgatgaggacgatgaggttcacgtg
aggccaaaagtggctgaggtagaccccagagaagaagccaatttcgagcaggagctcagg
gctgtcatgcaggagagtatggaccagcgcaggcaagagctacgtggccgaccaacattg
aatatgatgataccaatgaatttattcgagggatcgacaagggaccaccatggaaggggg
gctgggggagaaagtggggatgaggcattggaagaggatgctgggggaagcaaggaggtt
caggtgaaagttcttgtgaagcgtgggaacaagcagcaaaccaagaagatgtacatccct
cgtgatagtgcacttttacagagcactaaacagaaggaagcagaggagctagaagagaag
caagatattaagaggttaatcttggagtacaatgaccgtgaagaggaagaacttaatgga
ttaggctcccaaacaatgaattggatgcaaacagggaacaatagagcccctactcggggc
aacaactgggacgcctctggcgggaggagcggtgggtcgcatcatccccatcatcggtat
cctggcggcggcgtgcattatagtcgaaagaagtga
DBGET
integrated database retrieval system
