Cucurbita maxima (winter squash): 111489825
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Entry
111489825 CDS
T05246
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03013
Nucleocytoplasmic transport
cmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111489825
09122 Translation
03013 Nucleocytoplasmic transport
111489825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111489825
03041 Spliceosome [BR:
cmax03041
]
111489825
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111489825
Spliceosome [BR:
cmax03041
]
Complex C
Other components
EJC/TREX
111489825
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111489825
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
LIM_bind
Motif
Other DBs
NCBI-GeneID:
111489825
NCBI-ProteinID:
XP_022994002
UniProt:
A0A6J1JUH5
LinkDB
All DBs
Position
Unknown
AA seq
1891 aa
AA seq
DB search
MALPPVERIYVVESNLREWKSGNSSFRVPQPVPVLRFLYELCWTMVRGELPFPKCKAALD
SVEFSDQMSEEELGSTFADVITQLAQDITLAGEYRARLLKLAKWLVESAFVPLRLFQERC
EEEFLWEAEMIKIKAQELKNKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRVTDTS
NNNFSGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKYHASQILG
FKFQYYQRIEVNSPVPFGLYKLAALLVKEKFIVLDSIYAHLLPKEDEAFEHYDSFSSKRL
DEANRIGKINLAATGKDLMDDEKQGDVSIDLFSALDMESEAVNERSPELENNQTLGLLTG
FLSVGDWYHAHILFDRLSPLNPVEHLPICNSLFRLIEESISSAYSIVRQNPYQSLGASSG
TSIDTIGTTSLPVGGTFIDLPRELFQMLAAAGPYLYRDTILLQKVCRVLRGYYMSAIEFV
NSMESGLNPEFGILAGNRAPHLHLKEARLKIEEALGTCLLPSLQLIPANPSVGQGIWEVM
NLLPYEVRYRLYGEWEKDDEKIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAH
ANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGL
NLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELVQQMANVQYT
ENLTEEQLDAMAGSETLRFQATSFGVARNNKALIKSSNRLRDSLLPKDEPKLAVPLLLLI
AQHRSVVVINADAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPASAYAHLIPSLNELAHR
YHLDPEVAFLMYRPIMRLFKCQGGSDIFWPLDGNDANVAGNNSDMEPAECSADVVLDLGS
SQKLVRWSDLLDTVKSMLPPKAWNSLSPDLFTTFWGLTLYDLYVPRSRYETEIAKQHSAL
KALEELSDNSSSAINKRKKDKERIQESLDRLSSELVKHEENVASVRRRLSREKDKWLSSC
PDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQP
MICCCTEYEAGRLGRFLYETLKIAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQ
FIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIK
SDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPSLASKSSASNLAASQNNS
IYPSQNEPGGGKTAALAIPNSDSLNIGKDHSLRSRSSDVRMDKIDGSSVPKSELEHGKMK
GTSLNGPDSQPLVPSTSVHSGSLRMVESLKPGEDLSRTLDEGSSKVISKTSSESELRVSA
KRSAPAGSFNKAPKQDITKDEIRTGKAASKNPGSSTSERELPIHSTDGGRHGGSSNVPSS
VMPNGNTQGSLTKGSSLSVKALDGHTIESKAESGVGRTSDSRASSAKDDGTEALEVARSS
SSRLAHSPRHDNSTSGSRSSDKLQKRASPAEEPDRQGKRRKGDGETRDVDGDFCISDKDR
SMDPRSVDADKLGTDEQGGYRGSDKPLDRTKDKVNERYDREYRDRVERPEKSRGDDPSVE
RTRDRSIERYGRERSVEKVERVSDRYPEKSKDERNKDDRSKLRYTDSTIEKSHVDDRFHG
QSLPPPPPLPLHMVPQSVNSGRREEDADRRFGTTRHTRRLSPRHEEKERRRSEENLISQD
DAKRRREEEFRERKREERELGMSLKADDRDREREREKANLLKEDMDGSATSKRRKLKREH
LSLAEAGEYSPVGQPPPPIGVGASQSYDGRERGDRKGVMMQRAGYLDDPGLRIHGKEVVN
KMTRREADLMYDREWDDEKRMRADQKRRHRK
NT seq
5676 nt
NT seq
+upstream
nt +downstream
nt
atggctctccctccggttgagcgtatatatgttgtagaaagcaatcttcgagaatggaag
tccggaaattcgagctttagggttcctcaacctgtccctgtgcttcgattcctttacgag
ctctgctggaccatggtccgaggtgaattgccattcccgaagtgtaaagcagcattggat
tcagttgagttctcggatcaaatgtctgaggaggagttaggatcaacttttgctgatgtc
attacccaattggcccaagatatcacattagcaggagagtatcgtgctcgtctcttaaaa
ttggctaagtggcttgttgaatcagcatttgtcccattgcggctttttcaggagcggtgt
gaggaagaatttctatgggaggctgaaatgataaagattaaggcgcaagaattgaaaaat
aaagaggtcagagtaaatactcgtcttctatatcagcaaacgaagtttaatcttctgcgg
gaagaaagtgagggttatgccaagttggtaacacttctttgccgggtcactgacacttca
aataataatttttcgggatcaacaattggtattataaagtcattgatcgggcattttgat
ctggacccaaaccgtgtttttgacattgtcttggagtgctttgaacttcagccagaaaat
agtgttttcgtggagctaattccaatatttcccaagtatcatgcttcacaaatccttggg
ttcaaatttcaatattatcagcgtattgaagtaaattcgccagtgccatttgggctctat
aagcttgcagcgttactagtgaaggaaaaatttattgttcttgatagcatatatgcacat
ctgctcccgaaggaggatgaggcatttgaacattatgattccttttcttccaaaagactt
gatgaggctaacagaataggaaaaataaatcttgcggcaactggaaaggacctaatggat
gacgagaagcaaggagatgtaagcatcgatcttttttctgctcttgatatggaaagtgag
gcagtcaatgaaaggtctccagagctggaaaacaatcaaacattgggcttgcttactgga
tttctttctgtgggtgactggtatcatgcacacatactgtttgatcggctttcacctctc
aatcctgtggagcatcttccaatttgtaacagcttgtttaggctcattgaagaatcaatc
tcctccgcatattctattgtccgccaaaatccttatcagagcttgggggcatcctcagga
actagtattgatactataggcactacaagtttgccggtgggtggtacttttatagatctt
ccaagggaattatttcagatgcttgccgctgctggaccttatctctatcgtgatacaatt
ctgctacagaaggtttgtagagtgctgagaggttattatatgtcggctattgagtttgtc
aacagtatggaaagtggtctgaatcctgaatttggtatcctagctggaaaccgggctcct
catcttcacttaaaggaagcaaggctgaagattgaggaggccttaggaacgtgcctactt
ccttctttacagttgatacctgccaatccatctgttggtcaaggaatatgggaagtcatg
aaccttcttccatatgaggtgcgatatcgtttatatggtgaatgggagaaagatgatgag
aagattccaatggttttggctgcaaggcagacggcaaagttggacacacgaaggattttg
aagcggttggctaaagaaaatttgaagcaattgggtaggatggttgcaaaacttgctcat
gcgaatccaatgactgtccttcgtacaatagtacaccagattgaggcatatagggatatg
attactcctgtagtagatgcattcaagtatctgactcagcttgagtatgacatattggaa
tatgttgtgattgaacgtttggcacaaggagggcgtgataagttgaaggatgatggcctt
aatctctcagattggctccaatcattagcttcattttggggtcacctgtgtaagaagtac
ccatctatggaactaaggggtttgtttcagtatcttgtcaatcagttaaaaaaaggccaa
ggaattgagcttgttctcctgcaggagcttgttcaacaaatggctaatgtccaatacaca
gaaaacctgactgaggaacagttggatgctatggcaggaagtgagacactacgttttcag
gcaacttcttttggagttgcacgaaataacaaggcgttgatcaagtcaagcaacagactg
cgtgactcgttgcttcctaaggatgaaccaaaattggcggtcccgcttttgctacttatt
gctcaacaccgttcagtggttgttataaatgcagatgctccttacataaagatggtcagt
gagcagtttgatcgatgtcatggaactctgcttcaatatgtggaatttcttagtagtgca
gttacgccagcatctgcttatgctcatttgattccctcactcaatgaacttgcccatcgt
tatcacctagatcccgaggttgctttcctgatgtatcggccaataatgagactatttaag
tgtcaaggtggttctgatatcttctggccactggatggtaatgatgcaaatgttgctggc
aataattctgatatggaacctgcagaatgttctgctgatgtcgttttggatcttggttct
tcacagaaacttgtgaggtggtcagatctgctcgatactgtaaagtctatgttgcctcca
aaagcttggaatagcttgtctccagatctctttactacattttggggtctcaccctctat
gatctttacgttcctcggagtagatatgaaactgaaattgctaagcagcattctgctctt
aaagctttagaagagctttctgataactcaagttctgcaatcaataaaaggaagaaagac
aaagaaagaattcaagaatctcttgatcgcctgtccagtgaacttgttaagcatgaagaa
aatgttgcatcagttcgtagacgactttctcgtgaaaaggataaatggttgagctcctgt
cctgatactttgaaaattaacatggagttccttcagcgttgtatttttccccgctgtaca
ttcagcatgcctgacgctgtctactgtgctatgtttgtgcacactcttcattcccttgga
acaccatttttcaatacagtcaaccatattgatgttttgatatgtaaaaccttgcaaccc
atgatatgctgctgtacggaatatgaagcaggcaggcttgggaggtttttatatgagaca
ctaaagatagcttatcattggaagagtgatgaatccatttatgaacgtgaatgtggaaat
atgcctggatttgctgtctattataggtatccaaacagccaaagagtaacgtacggccag
ttcatcaaggttcattggaagtggagccaaagaattacacggttattgatacaatgcttg
gaatctacagagtacatggaaattagaaatgctcttataatgttgacaaaaatatccaat
gtgtttcccgtcactagaaagagtgggatcaaccttgagaaacgggttgctaagatcaaa
agcgatgaaagagaagatctgaaggtgttagcgactggcgttgctgcagccttggctgct
agaaagccttcatgggttacggatgaagagtttggcatgggttaccttgaattaaagact
gcaccatctcttgcatcaaagtcttcggccagtaatttagctgctagccaaaataattcc
atttatccttcccaaaatgaacctggtggagggaagactgctgcattagccatcccaaat
tcagattctttaaatataggcaaagaccattcattgaggtcaagaagttctgatgtgaga
atggataaaatagatggttcttctgttccaaaatctgaactcgagcatgggaaaatgaaa
ggcacgtcattgaacgggccagattcccagccactggtgccctcaacttctgtacattca
ggatcgttaagaatggtggaaagtctgaaacctggtgaagatttaagtaggactttggat
gagggctcatcaaaagttatttcaaagacctcgtctgaatccgagttgagagtttcagcg
aaacgatcagcacctgctgggtcttttaataaagcaccaaagcaagatatcacaaaagat
gagattagaacaggaaaagctgctagcaagaaccctgggtcttccacaagtgaaagggag
cttccaattcattcaacagacggtggtaggcatggaggctcttccaatgtaccttcttca
gttatgccaaacggtaatacacaaggttcgttaactaaaggctcgtccttatcagtaaaa
gctttagatggtcatactattgaatcaaaggcagaaagtggggttgggaggacttccgat
agtagggcttcatcagcaaaggatgatggcactgaagctcttgaagttgcaaggtcctct
tcttccagacttgctcattctcccaggcatgataattcgaccagtggttcgagatctagt
gataagctgcagaaaagagctagtcctgcagaagaacccgacagacaaggtaaacgccgg
aaaggagatggtgaaactagagatgtagatggggatttttgtatctctgacaaagataga
tctatggatccacgttctgtagatgctgataaactaggaacggatgaacaaggtggttac
agaggttcagacaagcctttggataggacaaaagataaagtaaatgaaaggtatgatagg
gaatacagagaccgggtagagcgccctgaaaagtcccgtggagatgatccatcagtagaa
agaacaagagatagatcaatagaaagatatggaagagaacgctctgttgaaaaagtggag
agagtttctgataggtatcctgaaaagtctaaggatgaaagaaataaagatgataggagc
aaattaagatatactgattcaactatagagaagtctcacgttgatgatcggttccacgga
cagagcttgccacctccgccgcccttgcctctacacatggtccctcaatctgttaatagt
gggagaagagaagaagatgcagataggaggtttggaactactagacacactcgaaggctc
tctcctagacacgaagagaaggaacgaagacgatcagaggaaaatttaatttcacaggat
gatgcaaaacgcagaagagaagaggaatttcgagaaagaaagagagaagagagagagttg
gggatgtcattgaaggctgatgacagggatagggagagggagagggaaaaggcaaacctt
ttgaaggaggacatggacggttctgccacctccaagaggcgaaaacttaaaagggagcat
ctgtcattagctgaggccggtgagtattctcctgttggccaaccacctcctccgataggt
gttggtgcgtctcaatcttatgatggacgagaaagaggagaccggaagggagtaatgatg
cagcgtgccggttacctggacgacccaggcttgagaattcacggtaaagaagtggtcaac
aagatgactagacgtgaagctgatctaatgtacgaccgagaatgggacgatgagaaaaga
atgagagcagatcagaagcggaggcatcggaaataa
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integrated database retrieval system
