Cucurbita maxima (winter squash): 111490096
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Entry
111490096 CDS
T05246
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmax03041
]
111490096
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111490096
Spliceosome [BR:
cmax03041
]
Complex C
Other components
Complex C specific factors
111490096
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_30
AAA_19
AAA_7
ResIII
SRP54
nSTAND3
AAA_11
T2SSE
AAA_23
AAA_29
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111490096
NCBI-ProteinID:
XP_022994348
UniProt:
A0A6J1K4X6
LinkDB
All DBs
Position
Unknown
AA seq
695 aa
AA seq
DB search
MAQFWKPGAEKPRLLDDGEGGVLFFSSSYSSSSGFGFSSIEKQRQRLPVYKYRSAILYLV
ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK
LGAEVGYTIRFEDLTNPDVTRVKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDM
LLGLLKKIQRRRPDLRLIISSATIEAKTMSTFFQTSKKRRGLEGEALEPKVEPAILSVEG
RGFNVQIFYLEEPVSNYVQSAVSTVLSIHEQEPPGDILVFLTGQDDIDTAVQLLTEHDRN
DRKKSELIVLPLYSGLSRAEQELIFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFS
KQRFYNPISDIENLIITPISKASARQRTGRAGRIRPGKCYRLYTEEYFINEMPAEGIPEM
QRSNLVTCVIQLKALGIDNILGFDWPSPPSPEVMIRALEVLYSLGVLDDDAKLTSPVGFQ
VAEIPLEPMISKMILASGDLGCSEEIITIAAVLSIQSIWTSSRGAQKELDEARLQFAAAE
GDHVTFLNVYKGFLQSNKSSQWCHKNFINYQAMKKVMEVREQLRRIAQRLGIVLKSCERD
TTVIRKAVTAGFFANACQLEAYSHNGMYKSIRGSQEVYIHPSSVLFRVNPKWVIYHSLVS
TDRQYMRNIITIDPGWLTEAAPHFYQYRQLTHMPH
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctggaaaccgggcgccgagaagccccgtctgctcgacgacggagagggt
ggcgttctgttcttttcttcttcttactcttcttcatctggatttgggttctcgagcatt
gaaaagcagcggcagagacttcctgtttataaatatcgctccgccattctgtatttagtg
gaaactcatgccactactatcattgttggcgagacgggtagcggaaaaaccactcaaatt
cctcagtacctcaaagaagcaggttgggctgatggtggtcgagtaattgcctgcacccaa
ccaagacgactggctgttcaggcagttgcttctagggtggctgaagagatgggtgttaag
cttggtgcagaagttggttatacaattcgatttgaagatcttacaaacccagatgtgacg
agggtgaaatttctcacagatggtgtgttactcagagagatgatggacgatccacttttg
actaagtatagtgtaataatggtggatgaagcacacgaaaggtctatctcgactgacatg
ttacttggtctcttgaaaaagatccaacgacggcgaccagatctacgattgattatctct
tctgctacaattgaggctaaaacgatgtcaactttcttccaaaccagcaaaaaacgtcga
ggacttgaaggtgaggcgcttgaaccaaaggtggaacctgctatcctatcagttgaggga
agagggtttaatgtacaaatcttttaccttgaggagcctgtttcaaactatgtccagtct
gccgtttcaactgtactgtcaattcatgaacaggaacctccaggtgatatacttgtattt
ctcactggccaagatgatattgatactgctgttcaattgcttacagaacatgaccgaaat
gatagaaaaaagtcagaattgatcgtcttgcctctgtactctgggctttcacgtgcagag
caggagcttatcttctcaccgacacccagggggaagaggaaagtagtgatttcaacaaat
atagcagagacatcattaactctagagggcattgtctatgtcgttgacagtgggttctcc
aagcagcggttctacaatccaatatcagatattgaaaaccttattattacaccgatatct
aaggcctcagctagacaaaggactggtcgggctggaagaattcggcctgggaagtgttac
agactgtataccgaagagtatttcatcaatgaaatgcctgctgagggtattcctgaaatg
caaagatcaaatcttgttacctgtgtcattcagttgaaagccttgggaattgataatata
ctaggctttgattggccatcacctccatctcctgaagtaatgattcgggcattagaagtt
ctttattcacttggagtcttggatgatgatgcaaagcttacttcgccagttgggtttcaa
gttgctgaaattccacttgagccaatgatctcaaaaatgatcttagcttctggtgacctt
gggtgctcggaggagatcattacaattgctgctgttctgtcaatacagtctatttggact
tctagtaggggagcgcagaaggaacttgatgaagcaaggttgcaatttgctgcagctgag
ggcgatcatgtgacctttcttaatgtgtacaaaggatttcttcagtctaataaatcttca
cagtggtgtcacaagaattttatcaattaccaagctatgaaaaaagtaatggaagttaga
gaacaactgagaagaatagcacagagattaggcatcgtcttgaaatcatgtgaaagagat
actacggttatacgcaaggcagttactgctggatttttcgccaatgcgtgtcaattagag
gcatacagtcacaatgggatgtacaagagtatcagaggttctcaagaagtttatattcat
ccctcttcagtgttattcagagttaatccaaagtgggtgatatatcattcgcttgtgtcg
actgaccgacaatatatgcgtaatatcatcaccattgatccgggatggttaaccgaggct
gctccccatttttaccagtacaggcagctcactcatatgcctcactga
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