Cucurbita maxima (winter squash): 111490340
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Entry
111490340 CDS
T05246
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
cmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111490340
09123 Folding, sorting and degradation
03018 RNA degradation
111490340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111490340
03041 Spliceosome [BR:
cmax03041
]
111490340
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111490340
mRNA degradation factors
5'-3' decay
Lsm complex
111490340
Spliceosome [BR:
cmax03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111490340
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
111490340
NCBI-ProteinID:
XP_022994688
UniProt:
A0A6J1K221
LinkDB
All DBs
Position
Unknown
AA seq
98 aa
AA seq
DB search
MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtggacctggacttgaatcactggttgatcaaacaatatcagttatcactaat
gacggccgcaatatagtgggagtgttgaaaggatttgaccaggctacaaatattatcctc
gatgaatctcatgaacgtgtttactcgaccaaggaaggagttcagcaacttgttttgggt
ctatatataatcagaggcgacaatataagcattgttggggagctagatgaagaacttgat
tcaaatttggacttgtcgaagttgagagcccatcctctaaagcctgtgattcattaa
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integrated database retrieval system