Cucurbita maxima (winter squash): 111490386
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Entry
111490386 CDS
T05246
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111490386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmax03021
]
111490386
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111490386
Transcription machinery [BR:
cmax03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111490386
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111490386
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
111490386
NCBI-ProteinID:
XP_022994747
UniProt:
A0A6J1JWQ9
LinkDB
All DBs
Position
Unknown
AA seq
706 aa
AA seq
DB search
MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSVPPAASAVSNSGAGAGGPPVTADA
SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN
KFFSQRGVGLSQQNEKSQFPPGPVTITQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ
SASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK
AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGIMWPPHM
PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM
NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP
PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD
EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggaggattcggagggtggtctcagcttcgatttcgagggcggtcttgatgccggtccc
accaaccccgccgccgcctccttgcccctcatccactctgactcttctgttcctcctgcc
gcctccgccgtctccaactctggcgccggtgccggtggtcctcctgttactgctgacgct
tctggcgccgcaactggcaacgttgggagccggaggagcttccggcagacggtttgccgg
cattggctccgcagcctgtgtatgaagggcgacgcttgtggcttccttcaccagtatgat
aaatctcggatgcccatttgccgattcttccgtctctatggcgagtgccgtgaacaggat
tgcgtgtataaacataccaacgaagatatcaaggagtgtaatatgtacaagtttggtttc
tgtccaaatggtcctgattgtcggtataggcatgctaagttgccgggacctccacctcca
gtggaagaaatccttcagaaaattcagcatttgggtccatacaattatggcacctcgaac
aaattcttttcacaacgtggagttggcttatctcaacagaacgaaaaatctcagtttcct
ccgggtccagtcaccattactcaaggagtgataggaaaaccttctgtagcagaatctgct
aatgtccaacaacagcaagcccaacagtctgcacaacaaaccagccaggctccaatacaa
agtgcttctaatggtcaggtcaatcaattaaacagaaattcaacatctttgcctcccgga
atatctaggtactttattgttaaaagttgcaaccgtgagaatttggaattatctgtacaa
caaggggtatgggcaactcaaagaagcaatgaagctaaacttaatgaagcttttgattct
gctgataatgttattttgattttctcagtcaatcggactcggcattttcagggttgtgca
aagatgatgactaggattggtggatctgtcagcgggggcaattggaagtatgcacatgga
actgcacattatgggcaaaacttttcactcaaatggctgaagttatgtgaactatccttt
cagaaaactcgccatttgagaaatccttataatgaaaacttaccagtaaagattagtaga
gattgccaagagctagaaccttctattggtgagcagctggcttctttgctttatcttgag
cccgatggtgacctcatggctgtctcgatagcagcggaatcaaaacgagaagaggagaaa
gcaaagggagttaatcccgatatcagaaatgagaatccagatattgtcccgtttgaggat
aacgaagaagaggaagaagaagaaagcgaagaggaggaggaggagagctttggccagtct
gttggtccaccagctcagggcagaggaaggggccgaggaatcatgtggcctccacacatg
ccgatggggcgtggtgcgaggcctttccatggaatgcaaggttttccacctgggatgatg
ggtccagatgggatgtcatatggacctgttacacctgatgggtttcccatgcctgacatt
ttcggtatggctcctcgtggtttcaatccatacggtgctagattttccggtgagtttatg
aatccccaatctgctatgatgtttcgtggacgaccttctcaacctggcgccatgtttcct
cctggtgggtttgggatgatgatgggtcaaggacgtggtccctttatgggtgggatgggg
gttactggtactaacccagctcgagctggtcggcctgtaggacctccattgtatccacct
cctgcagtaccttcatctcagaacatgaaccgagctatgaagagggatcaaaggggacca
ggtagtgataggaatgatagatatattgcaggttcagaccaaaacagaggccaggagata
ccgggtagcggacatgacgacgaaatgcaatataagcagggatcaaaagcttatcctgat
gagcaatatggtatgggaaccgccattaggaacgaagagagcgaaagtgaggacgaggca
cctcgacgatcaaggcacggagaggggaagaagaagcggagaggctcagaaggtgatgcc
actgcaatctctgatcagtga
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integrated database retrieval system
