Cucurbita maxima (winter squash): 111490698
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Entry
111490698 CDS
T05246
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03030
DNA replication
cmax03410
Base excision repair
cmax03420
Nucleotide excision repair
cmax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111490698
03410 Base excision repair
111490698
03420 Nucleotide excision repair
111490698
03430 Mismatch repair
111490698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmax03032
]
111490698
03400 DNA repair and recombination proteins [BR:
cmax03400
]
111490698
DNA replication proteins [BR:
cmax03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111490698
DNA repair and recombination proteins [BR:
cmax03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111490698
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
RCF1-5-like_lid
PTCB-BRCT
AAA_22
AAA_30
AAA_19
AAA_5
BRCT_2
AAA_assoc_2
Sigma54_activ_2
AAA_18
AAA_33
Zeta_toxin
RuvB_N
nSTAND3
Gp44_lid
RsgA_GTPase
AAA_24
AAA_28
AAA_17
RNA_helicase
AAA_14
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
111490698
NCBI-ProteinID:
XP_022995017
UniProt:
A0A6J1JXK0
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MADIRKWFMKAHDKDNGSASKHAKPDSSTTEKSAAAELQSGKAELSGGESTGRRITSKYF
ASEKQKSKDTTETEELPIKRKSPQDAKESPAKRRSQKDSKESLKVPPLQKLNKIDDNDDD
DAVISSSRKNLSDVTPNKKLKSGSGKGITQKPVKIEESDDEEAEGTESSRKQPSGRGRGG
RGSSAATVGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLE
REEAEDLIKRHGGRITGSISKKTNYLLCDEDIGGRKSSKAKELGTAFLTEDGLFDIIRAS
GTKAPPRQDSKKSVVKSVESPTGKSSLKVQAKTCKDLSAGASPAKQKRRTVEFSSLTWTE
KYKPKVPNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGPGI
GKTTSAKLVSQMLGYEAIEVNASDNRGKSDAKIQKGISGSNANSIKELISNSSLHFRTDQ
PKHPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDRYSQKLKSLVNYCLIL
SFRKPTKQQMAKRLSQVANAEGLQVNEIALEELAERVNGDIRMALNQLQYLSLSMSVIKY
DDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDISMSDMDLVPLLIQENYINY
RPSSVSKDDNGIKRMDLMARAAESIADGDIINVQIRRHRQWQLSQSSSIASCVIPASLLH
GQRETLEQGERNFNRFSAWLGKNSTFGKNMRLLEDLHVHILASRESCSRREHLRVENLTL
FLKRLTEPLHTLPKDEAVKMVVDFMSLYSISQEDFDTFMELSKFQGRKNPLDGVAPAVKA
ALTKAYKEARKTQMVRTADLITLPGIKKAPKKRIAAMLEPAEDTIEGTGGDTLAESDDEN
SLDNDYAEDSTNAGKKLQLELQNLKKEGMEVQLDLKGVENSNAKKPGGRGRGGGSQTSEK
KGGGRGSGSATKRKR
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggcggatattagaaaatggttcatgaaagcgcacgataaagacaatggcagtgcgtca
aagcatgcaaaacctgattcaagcactactgagaaatccgccgcagctgaactacagtcc
ggaaaagcagagctaagtggtggggaaagtactggcagaaggataactagcaagtatttt
gcctcagaaaagcagaagtctaaggatacaacagaaacagaggaactcccgatcaaacga
aagtctccacaggatgctaaggagtcaccagccaaaagaaggtcccaaaaggatagcaag
gaatcattgaaagttccacccctacaaaaattaaacaaaattgatgacaatgatgatgat
gatgctgttatttcaagttctagaaagaacttgtctgatgtcactcccaataaaaagttg
aagagtggttctggaaagggaattacacagaaaccggtaaaaattgaagagagtgatgat
gaggaagctgagggcactgagtcttctcggaagcagcctagtggaaggggtaggggggga
agaggttcatctgctgcaaccgttggtggtagaggcagaggtggtgggcggggtggattt
atgaattttggggaaaggaaagatcctccacacaaaggagaaaaggaagtccctgaagga
gctcctgactgtttagccggtttaacttttgtaatcagtggaacccttgacagtttggaa
cgagaagaagcagaagatttgataaaacgccatggtggtagaataactggatccatcagc
aaaaaaacaaattatctactatgtgatgaagatattggtggccgaaaatcttccaaagca
aaagagctgggaactgcttttctcactgaggatggcttatttgacattatccgtgcatca
ggcacaaaagctcctccaaggcaagattctaaaaaatctgtggttaagtccgtggaatct
ccaacagggaaaagttccctgaaagtacaagcgaagacatgcaaagatttgtctgctggt
gcttcacctgctaagcaaaaacgccgaacagttgaattttcttccctaacatggacagaa
aaatataagccaaaggttccaaatgacattatagggaatcagtcactggtcaaacaactt
catgattggttggcacattggaacgagaacttccttgatggtggaagcaaaaagaagggt
aaaaagctcaatgattctggtgccaaaaaagcaatcttgttatgtggaggtcctggcata
ggtaaaactacatcggctaagttggtcagccagatgcttggttatgaggctatagaggta
aatgccagtgacaatcggggtaaatcagatgcaaaaattcaaaagggaatcagcggaagc
aatgcaaatagtataaaggagcttatcagcaattcatctttgcatttcagaacggatcag
ccaaaacatcccaaaactgtgttgattatggatgaagtagatggaatgtctgctggagat
aggggtggagtcgctgatcttattgcaagcattaaaagctccaaaattccaattatctgc
atctgtaatgaccgctacagccagaagttgaaaagccttgtgaactattgtctgattctc
agttttagaaaacctacaaaacaacagatggcaaaaagattgagtcaagttgcaaatgca
gaaggacttcaagttaatgagattgctcttgaggaacttgcagaaagagtgaatggggat
atacgtatggcactaaatcagttgcagtacctgagtctgtcaatgtctgttattaaatat
gatgatattcgccaacgacttctgggcagtatgaaagatgaagacatctcgccgttcact
gctgttgataagctgtttggttttaattctgggaagttaaggatggatgaacggatagac
atcagtatgagtgatatggatctagtccctcttcttattcaggaaaattatattaattat
agaccaagctctgttagtaaggatgacaatgggatcaaacggatggatttgatggcccgt
gcagctgaatctattgcagatggggatataatcaatgtacagattcgaaggcatcgacag
tggcaactctctcaaagtagctcaattgcttcttgtgtaatcccagcttcattattgcat
gggcaaagagaaacgcttgagcagggagagcgtaattttaatagatttagtgcatggctg
ggaaaaaattctacttttggaaaaaatatgcggcttttggaggatttgcatgttcacatt
cttgcttctcgcgagtcctgttctaggagggaacacctacgagttgagaaccttacccta
tttctgaagaggttgactgaaccactgcacacgctgcctaaggatgaagctgttaaaatg
gttgtagattttatgagtctatattcgatcagtcaagaggattttgatacttttatggag
ttgtcaaaatttcagggtcgtaagaatccattggatggcgtggcccctgctgtcaaagct
gctctaacaaaggcatataaagaagcaagaaagacacagatggtgcggactgcagacctc
attacacttcctggaattaaaaaggcccctaagaagcgaattgcagcaatgctagagcca
gctgaggatacaatcgagggcactggtggagatacattggcagaaagtgacgatgagaac
tctttggacaacgactacgcagaagactcaacaaacgctgggaagaagctgcaactggaa
cttcaaaacttgaagaaggaaggaatggaagtgcagctagatttgaaaggtgtggaaaat
tcaaacgccaagaaacctggtggcagaggaagaggaggtggttcccagacttcagagaag
aaaggtggggggcgaggttcaggatctgccacaaagaggaaaagatga
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