Cucurbita maxima (winter squash): 111491880
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Entry
111491880 CDS
T05246
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03013
Nucleocytoplasmic transport
cmax03015
mRNA surveillance pathway
cmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111491880
09122 Translation
03013 Nucleocytoplasmic transport
111491880
03015 mRNA surveillance pathway
111491880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111491880
03041 Spliceosome [BR:
cmax03041
]
111491880
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111491880
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111491880
Spliceosome [BR:
cmax03041
]
Complex C
Other components
EJC/TREX
111491880
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111491880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
111491880
NCBI-ProteinID:
XP_022996719
UniProt:
A0A6J1K9H8
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MGETRENEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILAL
SRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagagaacgaatatgaggaagagctcctcgactacgaggaagaggaa
gagaaggcccccgattccgttggagctaaagtcaacggtgaagctggaaagaagggttat
gttggaattcatagttcgggattcagagacttcctattgaagccagagcttctccgtgct
attgtagactctgggtttgagcatccatctgaagtgcaacacgaatgtattccccaagct
attctcggcatggatgttatttgtcaagctaaatctggtatgggcaaaactgctgttttt
gttctgtcaacgctgcagcagattgaccctgttgctggtcaagtctctgcactagttctg
tgccatacgagggagcttgcataccagatctgtcacgaatttgagaggttcagcacttat
cttcctgatctgaaggttgctgtcttctatggtggggtgaatattaaaattcacaaagat
cttctgaaaaatgaatgtcctcatattgttgttggaacacctggaaggatactggcattg
tcaagagacaaggacctatctctgaagaacgtccgacattttatcttggatgagtgtgac
aagatgcttgagtcccttgatatgcggagagacgtacaggaaatcttcaagatgactcct
catgacaaacaagttatgatgttctctgcaacactcagcaaagaaatccgcccagtttgc
aagaagtttatgcaagatccaatggaaatatatgtagatgacgaggcaaagctgaccttg
catggtcttgtccagcattacatcaaattgagcgagatggagaaaaatcggaagctgaat
gatctccttgatgctttggacttcaatcaagtggttatttttgttaaaagtgttagtaga
gcagctgagctggataagttgttggtggagtgtaattttccctctatatgcatccactct
ggcatgtctcaagaagagaggttgactcgatacaagggctttaaagaaggacataagcgg
attcttgtggcaacagatttggttggtcgaggaattgacattgaacgtgtaaacattgtc
atcaattatgacatgccagattctgctgatacttatttgcacagggtcggcagagctggt
agatttggcaccaaagggcttgcaattacctttgtatcatctgcagctgattctgatgtt
ctcaataatgttcaagaaaggttcgaagtcgatattaaggagcttccagagcagattgat
acatccacatacatgccatcatag
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