Cucurbita maxima (winter squash): 111492024
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Entry
111492024 CDS
T05246
Name
(RefSeq) RNA polymerase sigma factor sigC-like isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
cmax
Cucurbita maxima (winter squash)
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmax03021
]
111492024
Transcription machinery [BR:
cmax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
111492024
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
HTH_31
KIF21A
Motif
Other DBs
NCBI-GeneID:
111492024
NCBI-ProteinID:
XP_022996943
UniProt:
A0A6J1KCF5
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE
ALKTYTCLSEAPQTLADGLLDLEEKEVEINSGAKSLSHLHYGSKNSGPSKVEDNFCSCTS
LPTGRASPFDMLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNACLSRTLKASS
SFRDLSDLPIEVGGDHNVNQKTDDQNHNIIVYSGKRAGRRSVKRRAMDNADKVASRPLAT
RAAKEKFRSSRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
WADASSIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVL
QGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS
GRRYSDDDVAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDT
VKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLRVSKEWVRKIERKA
TTKLKNEETVRNLSHYLD
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgggaacaagtttccgcccaaatctcaagtgggctttccaaattcagactcattcccgc
agggcctccccttccaagctctctccctatgcctctaaaggcagggaagcttcctttaat
tcaggaaggctttcgttcttctccagtacttgtgaggaaggagaggctatttctagagaa
gccttgaaaacatatacttgcttatctgaagctccacaaaccttagccgatggtctgtta
gatttggaagagaaagaggtagagataaacagtggggcaaagtcactcagtcatttgcat
tacgggtcgaaaaattctgggccatccaaggtagaggacaatttttgttcctgtacaagc
ttgcctactggcagggcctcgccttttgacatgttaatggaaaaccttgatgttttggag
gaaacttttactgaatcaggcatgctaagcttggaaagagatattgtattgcaactaaca
aaacttggagctttggagtttttcaatgcctgtctgtctaggacgcttaaagcatcatca
agttttcgtgatttgtcggacttacctattgaggttggtggagatcataatgtaaaccag
aaaaccgatgaccagaaccacaatatcatagtttactctggaaaaagagcaggaagaaga
tcagtaaaaaggagagcaatggataatgctgataaagttgcttcacggccgctagctaca
agagctgctaaagaaaaattccgtagttcgaggaaaaaagcatctaattcgaaaaaaaga
agatcgattgttgctcgaaatgaagctgaaatgtccaccggggttaaggtagttgcaaat
ttagaaagaattagagaaactttagaaaaggaatccggaagaacagcaagcatgagttgc
tgggccgacgcatccagcattgatataaaggacttgcagaaacagttacaatttggttgg
ttctgccaggatgagctcttaaggagtactaattcattggttatattccttgcaaagaaa
tatcgatgctccgggttaccaatggaggacttggttcaggcaggagccattggcgtgctg
caaggtgtggaaaggtttgacccgaaaaggggttttagattctcaacctatattcaatac
tggataaggaaatcaatgtcgagagtcgtggcacgaagttcaaggggaattcaaattcca
tggtcattaaccaaggcaataaatcaaatacagaaggctcgaaaagcgttgaacaacagt
ggtaggagatattcggatgacgatgtagccaaggctactggtcttcctttggccaaggtt
agagttgctagcaactgtttaaaagttgtgggttcagttgatcagaagataggtgatgga
ctaaatatgaaatatatggaattgacagcagatacatcaatagagagcccagaagacact
gtgaagcggaggctaatgaagaaagacatctttaatcttcttgaagtgttggaatcaagg
gagagacaggtcctggtgctgcgatacggactcatggattcccaacccaagtcgctcgag
gaaatcggaaaacttctgcgcgtaagtaaggaatgggttcgaaaaattgaaaggaaagcc
acaacaaagctgaaaaatgaagagactgtgagaaacttgagccattatttggattga
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