Cucurbita maxima (winter squash): 111492433
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Entry
111492433 CDS
T05246
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111492433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmax03021
]
111492433
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111492433
Transcription machinery [BR:
cmax03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111492433
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111492433
U7-dependent histone pre-mRNA processing factors
111492433
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
111492433
NCBI-ProteinID:
XP_022997543
UniProt:
A0A6J1KE99
LinkDB
All DBs
Position
Unknown
AA seq
692 aa
AA seq
DB search
MASVGQPPSFKKRELSATREEDKLIVTPLGAGTEVGRSCVYMSYKGKVVLFDCGIHPAYS
GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS
DFVKVSKVSIEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVVHS
TISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNVPIYYASPLAKRCLTVYETYTLS
MNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGGLQSGLSRQLFDLWCSDKKN
SCVLPGYVVEGTLAKTIINEPKEVTLMSGLTAPLNMQVHYISFSAHADFAQTSAFLEELM
PPNIILVHGEANEMGRLKQKLISQFSDRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEK
TPEVGETVSGLLVKKGFAHQIMAPDDLHIFSQLSTANINQRITIPYSNAFNVIVRRLKQV
YESVESSTDEESGVPTILVHDRVTVKHESERHISLHWTSDPLSDMVSDSVVALILNINRE
VPKVIVESEAVKTEEENKKKAEKVTHALLVSLFGNVKLGGNGKLVINVDGSIAELDKQSG
EVESENEVLKERVKTAFRRIQCAVKPIPPSAS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggttggacagccgccgtcctttaagaaacgggagttatccgcgacgagagag
gaggataagcttattgtaactcctcttggggctggcactgaagtgggtcgatcctgcgtt
tatatgtcttacaaaggcaaagttgttttgttcgattgtggaattcaccctgcttactct
ggcatggctgctttgccgtactttgatgagattgacccttcaacaattgatgttctgctc
attactcactttcatttggatcatgccgcatcactcccttatttcttggagaagactaca
ttcaaaggacgagtctttatgacttatgctactaaagcgatctacaagttgttgctgtcg
gactttgtgaaagtgagcaaagtttcgattgaagatatgttgttcgacgagcaggacata
aatcgttccatggacaaaattgaggtcattgatttccatcaaacagtagaagtaaatggt
attcggttttggtgttacactgctggtcatgtgcttggtgctgccatgtttatggtggat
attgctggcgtccgagtcctctacactggagactattcgcgtgaagaagatcgacatctt
cgagccgccgagatgcctcaattttctcctgatgtttgtataatcgaatctacatatggt
gtccagctccatcaacctcgacatattcgagagaagcgcttcactgatgttgtacattca
accatttctcaaggtggtcgtgtgctgattccagcttttgcccttggacgtgcccaggaa
ctcctccttattcttgacgagtactgggcgaaccatcccgagctccataatgttcccata
tattatgcttctcctctggcaaaaagatgtttgactgtatacgagacgtacacgctctcc
atgaatgataggatccaaaatgccaaatcaaacccctttaggttcaagtacatatcccca
ctaaagagcattgaagttttcaaagatgttggcccatcagtggtgatggccagccctggt
ggacttcagagcggtttatcacgacaactctttgacttgtggtgttctgataagaaaaat
tcatgtgtgcttcctggttatgttgttgaagggacactggctaagactatcatcaatgaa
ccaaaggaagtcaccctcatgagtggactcacagctcctcttaacatgcaggttcattac
atttccttctctgctcatgctgacttcgcgcagaccagcgcgttcttggaagagctcatg
ccgcccaacataattctcgtgcacggagaagctaatgagatggggaggctcaaacagaag
cttatatcccagttttctgatcggaatacaaagattcttactccaaagaattgtcagtct
gttgaaatgtacttcaactctcagaagatggcaaaaactattggaaaattggctgagaaa
accccagaagttggcgaaactgtcagcggtttactggtgaagaaaggatttgcacatcaa
ataatggcaccagatgatctacacatcttctctcagctatcaactgccaacatcaaccag
cgtattacaattccatactcgaatgcctttaatgtgattgtacgcaggctcaaacaggta
tatgagagtgtagaatcttcaacagatgaggagtccggagttccaacgattcttgtgcac
gatcgtgtgacagtaaagcacgaatcagagaggcacatctcacttcactggacatcagac
ccattaagcgacatggtttcggattctgttgtagctctcatcctgaacatcaaccgcgag
gtaccgaaagtcatcgtcgagtcagaggctgtaaaaacggaagaagagaacaaaaagaaa
gcggagaaggtaactcatgccctccttgtttcactctttggcaatgtgaagttgggagga
aatgggaagctggtgatcaacgttgatgggagtatagcagagcttgataaacagagtggg
gaggttgaaagtgaaaatgaagttctcaaggaaagagtaaagacagccttccggcgaatc
caatgcgctgtgaagccaattcctccctctgcatcttag
DBGET
integrated database retrieval system
