Cucurbita maxima (winter squash): 111493042
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Entry
111493042 CDS
T05246
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111493042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmax03041
]
111493042
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111493042
Spliceosome [BR:
cmax03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111493042
Complex B
111493042
Complex C
U2 SnRNP specific factors
111493042
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
WRKY
ResIII
IMUP
CMS1
Motif
Other DBs
NCBI-GeneID:
111493042
NCBI-ProteinID:
XP_022998393
UniProt:
A0A6J1KGL8
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MSKRKFGFEGFGINRQTTYNFERSQAPQRLYVPPSSRGHGHDNYEDTDVDNIEYDDNEAE
EASGNGDNVAGAGGGEEEEIDPLDAFMEGIHEEMKAPPPPKPKEKVDKYRDDEEDDPMES
FLKAKKDVGLTLAADALHAGYDSDEEVYAAAKAVDAAMVEYDSDDNMLIVEKKKIESIPA
LEHSSIDYEPFNKDFYEEKASISGMSEEEVSEYRKNLAIRVSGFDVPRPIKTFEDSGFSL
QLMNAIKKQGYEKPTSIQCQAMPIVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELE
KEEGPIGVICAPTRELAHQIYLECKKFSKVHGLRVSAVYGGMSKFDQIKELKAGCEIVVA
TPGRLIDMIKMKALTMSKATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP
RKVEKLAREILTDPVRVTVGEVGMANEDITQVVHVLPSDLEKLPWLLEKLPEMIDDGDVL
VFASKKATVDEIESQLLQKGFKVAALHGDKDQASRMETLQKFKSGVYHALIATDVAARGL
DIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDRDGKAHTLITQKEARFAGELVNSLIAAG
QNVSMELMDLAMKDGRFRSKRDARKKGGGGGGGGYLPFSDSTTGSSLFDFCDGEKLSVGF
MELLGVKNGEFKDYCSEVVNPPDTPNSSSISSPSTDAADHEADGENQQQQQHKPSSNPLK
VKRRKQKREKGQRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNASCNVKK
RVERSFVDPTVVVTTYEGQHTHPSPILTRSALAIATPPRPSVDMLGGGCVDVAPIPWLKA
SNDTHAISHQYIQNSTFFTPQHSTVDYNRSLIGAANMAGFLPENRLRNPNPAFLADHGLL
QDVVPPHMLKQE
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggaagttcggctttgaagggtttggaatcaatcgacaaactacttacaat
ttcgagcgctcccaagctccccagaggctttatgtccctccctcgtcgcgcggccatggg
cacgacaattatgaagatacagacgttgataatatagaatatgatgataatgaagcggag
gaggcgagtggaaatggcgacaatgtcgctggcgctggcggtggtgaagaagaagaaatt
gaccctttagatgcgttcatggagggaattcacgaagagatgaaagcacccccgcccccg
aaaccgaaggagaaagtggataagtatagggacgacgaggaggatgatccaatggagagc
tttcttaaggctaagaaggacgtgggactgacgctggctgctgatgcgcttcatgctggt
tatgattcggatgaggaggtttatgcggcagctaaggctgtggatgcagcgatggttgag
tacgactctgatgataatatgctgattgttgagaagaaaaaaattgaatcaattcctgct
ctagaacatagttccattgattacgagccgttcaataaggatttctacgaggagaaagct
tcaatatcagggatgagtgaggaggaagtttctgagtaccggaagaatttggctattcgt
gtgtcgggttttgacgttcctaggccaattaaaacatttgaagactctggattttccctt
caacttatgaatgctataaaaaagcaagggtatgagaaacctacttctatacagtgccaa
gctatgccgattgtgctttccgggagagatatcattggaatagcaaaaacgggttccggt
aagactgcttcttttgttcttccaatgattgttcatattatggatcaacctgaacttgaa
aaagaagagggtcctattggagtgatatgtgcccccaccagagaactcgctcaccaaata
tacctcgagtgtaaaaaattttcaaaagtacacgggctacgtgtctctgcagtatatggt
gggatgtctaaatttgatcagataaaagaactcaaagctggatgcgagatagttgttgcc
actcccggcagactgatagatatgataaaaatgaaagccttgacaatgtcaaaagccaca
tacttggtacttgatgaagcggatagaatgtttgaccttggatttgaaccccaaattcgc
tccattgttggtcagattcggccagaccgtcaaaccttgctcttttctgcaacaatgcct
cgtaaggttgaaaagttagctcgagaaattctcaccgatcctgtacgagttacggttgga
gaggttgggatggctaatgaagatatcacacaggttgttcatgtacttccttctgatctg
gagaagttgccttggcttcttgagaagttacctgaaatgattgatgatggggatgtattg
gtgtttgcttctaaaaaagccacagtggatgagattgaatctcaactcctacagaaaggt
tttaaggttgcagctcttcatggtgacaaagatcaggcatcacgaatggaaactctgcaa
aagtttaaatctggtgtttatcatgctcttattgcaactgatgttgctgcccgtgggctt
gacattaagtcaatcaagtccgttgtaaactttgatattgcaaaggacatggacatgcat
gttcatcgtattggtagaacaggtcgtgctggtgacagggatgggaaagcacacaccctt
ataactcagaaagaggctcgctttgctggcgaattagtcaatagtttgattgctgctggc
cagaatgtttcaatggaactgatggatctggccatgaaggatgggcgattcaggtcgaag
cgtgatgcaagaaaaaaaggaggcggcggcggcggcggtgggtatttgccattttccgac
agtacgacaggcagcagtttatttgatttttgtgatggtgaaaaattgtctgttgggttt
atggagctgcttggtgttaaaaatggtgaatttaaggattattgttcggaggttgtgaac
cctccggacacccctaattcctcctccatctcctccccctctaccgacgctgccgatcat
gaggccgacggtgaaaatcagcagcagcagcagcacaagcccagtagtaatcctttgaag
gtgaagaggaggaagcaaaagagagagaaggggcaaagatttgctttcatgaccaagagt
gaggtcgatcatctcgaagatgggtatcgatggaggaagtacggccaaaaagcggtcaaa
aacagcccttttcctaggagctattatcgatgcaccaatgcatcttgtaacgtaaagaag
agagttgaacgatcttttgttgatccaaccgtcgtggtcaccacctacgaaggccaacac
actcacccaagtccgattctcactcggtccgccctagccatcgccactccacctcggccc
tctgttgacatgttaggaggaggttgtgtcgatgttgcacccataccatggctcaaagct
agcaacgacactcatgcaatatctcatcaatacatacaaaactcgaccttcttcactccc
caacattcaaccgtcgattacaaccgcagcctcatcggagcagcgaacatggccggattt
cttcccgagaacagattgcgcaacccaaatcctgcttttctggccgaccatgggctgctt
caagatgttgttcctcctcatatgctcaaacaggagtaa
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