Cucurbita maxima (winter squash): 111493616
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Entry
111493616 CDS
T05246
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111493616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmax03041
]
111493616
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111493616
Spliceosome [BR:
cmax03041
]
Complex C
Other components
Step II factors
111493616
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
nSTAND3
AAA_30
ABC_tran
AAA_16
TsaE
Sigma54_activ_2
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
111493616
NCBI-ProteinID:
XP_022999145
UniProt:
A0A6J1KEH4
LinkDB
All DBs
Position
Unknown
AA seq
1231 aa
AA seq
DB search
MVASTANGDDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITEMGRRCETVDEFDSKL
KENGAEMPDYFVRSLLRIIHLILPPQKDDNEKEFKKEKESDGKKGKFRALAIGDDKERAK
ELVKEIELEAHQKRGDRDVQDDRYKGRAGDRGRDRDRDRDRDRDRDRDGDRNRNRDRDRD
RDRDGYRDRDWDRDKDRDRRRDRYERDERHGGRDRGDDGGDDYQRSGRPRDRNKRNGYEE
NEGYTGDARDGNGNWRDDRDKHTQNGRHLPVDHEPELYKVYKGRVSRVMDTGCFVQINDF
RGKEGLVHVSQMATRRITNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQHSGKDLLPL
KKKDADDGPRMNPSNTKDDGPVVRTGLSGIKIVEDDVTIPSRRPLKRMSSPERWEAKQLI
ASGVLSVNDYPSYDDEGDGLLYQEEGAEEELEIELNEDEPEFLQGQSRYSIDMSPVKIFK
NPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELR
GVGLSAYDMPEWKKDAYGKDISFGQKSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVI
GETGSGKTTQVTQYLAEAGYTTSGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIR
FEDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVVMLDEAHERTIFTDVLFGLLKQLVKR
RPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQI
HLTEPEGDVLLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFEP
APPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR
AGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGHTTLTMKAMGINDLLSFDFMD
PPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILT
IIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFV
QSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTL
VENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRYFKVADPT
KMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atggttgcttccacggctaatggcgacgatggattgaagaagctcgagtacttatccctc
gtctccaaggtatgttctgagctcgaaactcatttagggttcggagataaagtacttgct
gagttcataactgagatgggccggagatgtgagacggtggacgagttcgattccaaattg
aaggagaacggtgccgaaatgcccgattactttgttcgctcgctcctgaggatcattcac
cttattcttcctccgcagaaggatgacaatgagaaggagttcaagaaggagaaggaatca
gatgggaaaaaaggcaagtttagggccttggcgatcggggatgataaggagagagctaag
gagctcgtgaaggaaattgagttggaggctcaccagaagcgtggggacagagacgtacag
gatgatcgatacaaggggagggcaggggaccgaggaagagacagagacagagacagggat
agggatagggatagggatcgagatggtgacagaaatagaaatagagatagagatagagat
agagatagagatgggtacagggatcgggattgggatcgagacaaggatagagataggcgc
agggatagatatgaaagggatgagagacatggtggtagggatcgtggtgatgatggtggt
gatgattatcagagaagtggaaggccaagggatcggaataagaggaatgggtatgaagaa
aatgaaggttacacaggggatgcaagagatggtaatggcaattggagagatgatagggac
aagcatacacaaaatgggcgacacctccctgtcgatcacgaacctgaattgtacaaggtc
tacaagggtagagtttctagagtgatggacacgggttgctttgtccagataaatgatttc
agaggcaaggagggtctggttcacgtttctcagatggctactcgaaggattaccaatgcc
aaggatgttgtaaagcgagatcaagaggtttatgtcaaggttatttcagtttcagggcaa
aagttgagcctttctatgagggacgtggatcaacattctggtaaggatttgcttccgctg
aagaaaaaagatgccgacgatggtcctagaatgaatccttcaaatacgaaggatgatggc
ccagtggttaggactggcctttctggaattaagattgtggaagatgatgttactattcct
tcacgcagacctttgaagagaatgagctcacctgagagatgggaagccaaacaactgatt
gcttctggtgttttaagtgtaaacgactatccttcatatgatgatgagggagatgggcta
ttatatcaagaagagggtgctgaagaggagcttgagattgagttgaatgaagacgagcct
gaatttctgcaaggccagagtagatactcaattgacatgtcgccagttaagatattcaaa
aatccggaagggtctctgagccgggcagctgcacttcaatctgcactgattaaggagcgc
agggaagttcgtgagcagcagcaaaggaccatgctcgattcaattccgaaggatcttaat
cgaccttgggaagaccctatgccagagactggtgagaggcatcttgcacaggagctcagg
ggcgttggcttgtcggcctatgatatgcctgagtggaagaaggatgcttatggaaaagat
attagtttcgggcagaaatcgaagctctctatccaggaacagaggcaaagcttacccatt
tacaagctgaagaaagaacttattcaggccgttcatgataatcaggtacttgttgtcatt
ggtgagactggttcaggtaagacaacccaggtaactcagtatcttgctgaagctggatac
acaacctccggtaaaattgggtgcactcaaccacgtagggtggctgcaatgtctgtcgcg
aagagggttgctgaagagtttggatgtcgcttaggagaggaagttgggtatgcaattcgt
tttgaggattgcactggacctgatactgtgatcaagtatatgactgatggtatgcttctt
agggagattttgattgatgataacttgtcacagtactcggtagttatgcttgatgaagct
cacgagagaacaatcttcactgatgttctttttggattgctgaagcaacttgtgaaaagg
agacctgatcttcgactgattgtcacatctgctactttagatgccgaaaaattttcagga
tatttctttaattgtaatatttttacaattcctgggcgaactttccctgtggagatcctc
tatactaagcagccagaaactgattatcttgatgctgctttaatcacagtcttgcagatc
catttgacagagcctgaaggtgacgtacttcttttcttgactggccaggaggagattgat
tttgcatgtcagtctctatacgagagaatgaaaggactcggtaaaaatgttcccgagtta
attattctaccagtctacagtgccttgcccagtgaaatgcagtccaggatttttgaacca
gctcctcctggtaagaggaaagttgtagtggcgactaacattgctgaggcttcattgaca
atagatggaatcttttatgttattgatcctgggtttgctaaacagaatgtatataaccca
aagcaagggcttgattctcttgttatcacaccaatttcacaagcatcagccaaacaacgt
gcggggcgtgctgggcgaacaggacctggaaaatgttaccgcctctatactgagagtgct
tatcgcaacgagatgtctcctacaacaataccagaaatccagagaatcaatcttggtcat
actactcttactatgaaagccatggggataaatgatctcctatcatttgattttatggat
ccaccttcaccccaagcactaatttcagcaatggaacaactttacagtctaggagcactg
gacgaagaaggacttctgactaagttgggtagaaaaatggccgaatttcctttagatcca
cctttgtctaagatgctgctagctagtgtggatcttggatgtagtgatgagattttgacc
ataattgcaatgattcagactggaaatatcttttacaggccaagggaaaaacaagcccag
gctgatcagaaaagggccaagtttttccagccagagggagatcatcttactttgcttgca
gtttatgaggcgtggaaagccaaaaacttttcaggcccttggtgttttgaaaactttgtt
caatctcgatccttgaggagagcacaggatgtgaggaaacaacttctttcaattatggac
aagtataaactggacgtggtgagtgcaggcaagaatttcacacagataaggaaggcaatt
acagcagggttctttttccacgcagccagaaaggatcctcaagagggttatcgaacgcta
gttgagaaccaaccggtttatatccatccaagcagcgctttattccaaagacaacccgac
tgggtcatataccacgagctagtcatgacaacaaaagagtacatgcgtgaagtgacagtc
atagatcccaaatggcttgttgaactagctccaagatacttcaaagttgcagacccaaca
aagatgagtaagcgaaagcgacaagagcggatcgaaccactctacgacaggtatcacgaa
cctaactcttggcgattgagtaagagacgagcttaa
DBGET
integrated database retrieval system
